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HP15_3457 ATP dependent DNA ligase [ Marinobacter adhaerens HP15 ]

Gene ID: 12403152, updated on 12-Apr-2014
Gene symbol
HP15_3457
Gene description
ATP dependent DNA ligase
Locus tag
HP15_3457
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Marinobacter adhaerens HP15 (strain: HP15)
Lineage
Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacter
Sequence:
NC_017506.1 (3637845..3638699, complement)

NC_017506.1Genomic Context describing neighboring genes Neighboring gene glycerophosphoryl diester phosphodiesterase family protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

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    Base excision repair, organism-specific biosystemBase excision repair (BER) is the predominant DNA damage repair pathway for the processing of small base lesions, derived from oxidation and alkylation damages. BER is normally defined as DNA repair ...
  • Base excision repair, conserved biosystem (from KEGG)
    Base excision repair, conserved biosystemBase excision repair (BER) is the predominant DNA damage repair pathway for the processing of small base lesions, derived from oxidation and alkylation damages. BER is normally defined as DNA repair ...
  • Mismatch repair, organism-specific biosystem (from KEGG)
    Mismatch repair, organism-specific biosystemDNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preven...
  • Mismatch repair, conserved biosystem (from KEGG)
    Mismatch repair, conserved biosystemDNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preven...
  • Nucleotide excision repair, organism-specific biosystem (from KEGG)
    Nucleotide excision repair, organism-specific biosystemNucleotide excision repair (NER) is a mechanism to recognize and repair bulky DNA damage caused by compounds, environmental carcinogens, and exposure to UV-light. In humans hereditary defects in the ...
  • Nucleotide excision repair, conserved biosystem (from KEGG)
    Nucleotide excision repair, conserved biosystemNucleotide excision repair (NER) is a mechanism to recognize and repair bulky DNA damage caused by compounds, environmental carcinogens, and exposure to UV-light. In humans hereditary defects in the ...
Names
ATP dependent DNA ligase
YP_005887149.1

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_017506.1 

    Range
    3637845..3638699
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_005887149.1 ATP dependent DNA ligase [Marinobacter adhaerens HP15]

    See proteins identical to YP_005887149.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    E4PFF0
    Conserved Domains (3) summary
    cd08041
    Location:202278
    Blast Score: 336
    OBF_kDNA_ligase_like; The Oligonucleotide/oligosaccharide binding (OB)-fold domain of kDNA ligase-like ATP-dependent DNA ligases is a DNA-binding module that is part of the catalytic core unit
    PRK09125
    Location:1281
    Blast Score: 1112
    PRK09125; DNA ligase; Provisional
    cd07896
    Location:27200
    Blast Score: 661
    Adenylation_kDNA_ligase_like; Adenylation domain of kDNA ligases and similar proteins