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ligC ATP-dependent DNA ligase [ Sinorhizobium meliloti 1021 ]

Gene ID: 1236424, updated on 12-Apr-2014
Gene symbol
ligC
Gene description
ATP-dependent DNA ligase
Locus tag
SM_b20008
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sinorhizobium meliloti 1021 (strain: 1021)
Lineage
Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium
Old locus tag
SMb20008
Location:
plasmid: pSymB
Sequence:
NC_003078.1 (12297..13364)

NC_003078.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene catalase C protein Neighboring gene transcriptional regulator Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

  • Base excision repair, organism-specific biosystem (from KEGG)
    Base excision repair, organism-specific biosystemBase excision repair (BER) is the predominant DNA damage repair pathway for the processing of small base lesions, derived from oxidation and alkylation damages. BER is normally defined as DNA repair ...
  • Base excision repair, conserved biosystem (from KEGG)
    Base excision repair, conserved biosystemBase excision repair (BER) is the predominant DNA damage repair pathway for the processing of small base lesions, derived from oxidation and alkylation damages. BER is normally defined as DNA repair ...
  • Mismatch repair, organism-specific biosystem (from KEGG)
    Mismatch repair, organism-specific biosystemDNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preven...
  • Mismatch repair, conserved biosystem (from KEGG)
    Mismatch repair, conserved biosystemDNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preven...
  • Non-homologous end-joining, organism-specific biosystem (from KEGG)
    Non-homologous end-joining, organism-specific biosystemNonhomologous end joining (NHEJ) eliminates DNA double-strand breaks (DSBs) by direct ligation. NHEJ involves binding of the KU heterodimer to double-stranded DNA ends, recruitment of DNA-PKcs (MRX c...
  • Non-homologous end-joining, conserved biosystem (from KEGG)
    Non-homologous end-joining, conserved biosystemNonhomologous end joining (NHEJ) eliminates DNA double-strand breaks (DSBs) by direct ligation. NHEJ involves binding of the KU heterodimer to double-stranded DNA ends, recruitment of DNA-PKcs (MRX c...
  • Nucleotide excision repair, organism-specific biosystem (from KEGG)
    Nucleotide excision repair, organism-specific biosystemNucleotide excision repair (NER) is a mechanism to recognize and repair bulky DNA damage caused by compounds, environmental carcinogens, and exposure to UV-light. In humans hereditary defects in the ...
  • Nucleotide excision repair, conserved biosystem (from KEGG)
    Nucleotide excision repair, conserved biosystemNucleotide excision repair (NER) is a mechanism to recognize and repair bulky DNA damage caused by compounds, environmental carcinogens, and exposure to UV-light. In humans hereditary defects in the ...
Names
ATP-dependent DNA ligase
NP_436551.1
  • catalyzes the ATP-dependent formation of a phosphodiester at the site of a single-strand break in duplex DNA; in mycobacteria LigC has weak intrinsic nick joining activities and is not essential for growth

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003078.1 

    Range
    12297..13364
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_436551.1 ATP-dependent DNA ligase [Sinorhizobium meliloti 1021]

    See proteins identical to NP_436551.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    Q92XF1
    Conserved Domains (3) summary
    cd07970
    Location:228349
    Blast Score: 372
    OBF_DNA_ligase_LigC; The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase LigC is a DNA-binding module that is part of the catalytic core unit
    cd07905
    Location:32226
    Blast Score: 743
    Adenylation_DNA_ligase_LigC; Adenylation domain of Mycobacterium tuberculosis LigC-like ATP-dependent DNA ligases
    PRK08224
    Location:25354
    Blast Score: 1351
    ligC; ATP-dependent DNA ligase; Reviewed