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    TTC8 tetratricopeptide repeat domain 8 [ Homo sapiens (human) ]

    Gene ID: 123016, updated on 14-May-2013
    Official Symbol
    TTC8provided by HGNC
    Official Full Name
    tetratricopeptide repeat domain 8provided by HGNC
    Primary source
    HGNC:20087
    See related
    Ensembl:ENSG00000165533; MIM:608132; Vega:OTTHUMG00000170884
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    BBS8; RP51
    Summary
    This gene encodes a protein that has been directly linked to Bardet-Biedl syndrome. The primary features of this syndrome include retinal dystrophy, obesity, polydactyly, renal abnormalities and learning disabilities. Experimentation in non-human eukaryotes suggests that this gene is expressed in ciliated cells and that it is involved in the formation of cilia. Alternate transcriptional splice variants have been characterized. [provided by RefSeq, Jul 2008]
    Location :
    14q31.3
    Sequence :
    Chromosome: 14; NC_000014.8 (89290978..89344335)
    See TTC8 in Epigenomics, MapViewer

    Chromosome 14 - NC_000014.8Genomic Context describing neighboring genes Neighboring gene zinc finger CCCH-type containing 14 Neighboring gene echinoderm microtubule associated protein like 5 Neighboring gene transfer RNA alanine 17 (anticodon AGC) Neighboring gene metallophosphoesterase 1 pseudogene

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Bardet-Biedl syndrome

    Summary from GeneReviews: Bardet-Biedl Syndrome Go to GeneReviews

    Disease Characteristics
    Bardet-Biedl syndrome (BBS) is characterized by rod-cone dystrophy (>90%), truncal obesity (72%), postaxial polydactyly, cognitive impairment, male hypogonadotrophic hypogonadism, complex female genitourinary malformations, and renal abnormalities. The visual prognosis for children with BBS is poor. Night blindness is usually evident by age seven to eight years; the mean age of legal blindness is 15.5 years. Birth weight is usually normal, but significant weight gain begins within the first year and becomes a lifelong issue for most individuals. A majority of individuals have significant learning difficulties, but only a minority have severe impairment on IQ testing. Renal disease is a major cause of morbidity and mortality.
    Diagnosis Testing
    The diagnosis of BBS is established by clinical findings. Fourteen genes are known to be associated with BBS: BBS1, BBS2, ARL6 (BBS3), BBS4, BBS5, MKKS (BBS6), BBS7, TTC8 (BBS8), BBS9, BBS10, TRIM32 (BBS11), BBS12, MKS1 (BBS13), and CEP290 (BBS14). Mutations in WDPCP and SDCCAG8 may be associated with BBS15 and BBS16, respectively. Molecular genetic testing is available on a clinical basis for all 14 known BBS-related genes and for WDPCP, mutations in which may be associated with BBS.
    Genetic Counseling
    BBS is typically inherited in an autosomal recessive manner. Both interfamilial and intrafamilial phenotypic variability exists. In some families, mutations in more than one BBS locus may result in a clinical phenotype of BBS. However, such families are difficult to identify and by previous estimations may account for less than 10% of all BBS. It is thus prudent to use the following autosomal recessive risk figures when providing genetic counseling: at conception, each sib of an affected individual has a 25% chance of being affected, a 50% chance of being an asymptomatic carrier, and a 25% chance of being unaffected and not a carrier. Carrier testing is possible if the disease-causing mutations in a family are known. Prenatal diagnosis using second-trimester ultrasound examination to detect anomalies associated with BBS such as postaxial polydactyly and renal cysts has been reported. Few laboratories offering molecular genetic testing for prenatal diagnosis of BBS are listed in the GeneTests(TM) Laboratory Directory; however, for pregnancies at increased risk in families in which the disease-causing mutations have been identified, prenatal testing may be available through laboratories offering custom prenatal testing.
    References

    Retinitis pigmentosa 51

    Summary from GeneReviews: Retinitis Pigmentosa Overview Go to GeneReviews

    Disease Characteristics
    Retinitis pigmentosa (RP) is a group of inherited disorders in which abnormalities of the photoreceptors (rods and cones) or the retinal pigment epithelium (RPE) of the retina lead to progressive visual loss. Affected individuals first experience defective dark adaptation or "night blindness," followed by constriction of peripheral visual fields and, eventually, loss of central vision late in the course of the disease.
    Diagnosis Testing
    The diagnosis of RP relies on documentation of progressive loss in photoreceptor function by electroretinography (ERG) and visual field testing. Mutations in more than 50 different genes or loci are known to cause nonsyndromic RP. Molecular genetic testing is available on a clinical basis for many RP- related genes. For all other genes, molecular genetic testing is available on a research basis only.
    Genetic Counseling
    The mode of inheritance of RP is determined by family history and, in some instances, by molecular genetic testing. RP can be inherited in an autosomal dominant, autosomal recessive, or X-linked manner. Females with an X-linked RP mutation may be unaffected or may show clinical symptoms. Such affected females are usually (but not always) less severely affected than males of the same age. Some digenic and mitochondrial forms have also been described. Genetic counseling depends on an accurate diagnosis, determination of the mode of inheritance in each family, and results of molecular genetic testing.
    References
    Products Interactant Other Gene Complex Source Pubs Description
    Q8TAM2 Q15154 PCM1    HPRD  PubMed  
    BioGRID:125811 BioGRID:113164 UBC    BioGRID  PubMed Affinity Capture-MS 

    Markers

    Homology

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    cilium assembly TAS
    Traceable Author Statement
    more info
    PubMed 
    establishment of anatomical structure orientation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    fat cell differentiation IEA
    Inferred from Electronic Annotation
    more info
     
    sensory processing TAS
    Traceable Author Statement
    more info
    PubMed 
    Component Evidence Code Pubs
    BBSome IDA
    Inferred from Direct Assay
    more info
    PubMed 
    centrosome IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cilium IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cilium membrane IEA
    Inferred from Electronic Annotation
    more info
     
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    microtubule basal body IDA
    Inferred from Direct Assay
    more info
    PubMed 
    photoreceptor connecting cilium IEA
    Inferred from Electronic Annotation
    more info
     
    Preferred Names
    tetratricopeptide repeat protein 8
    Names
    tetratricopeptide repeat protein 8
    TPR repeat protein 8
    Bardet-Biedl syndrome type 8
    bardet-Biedl syndrome 8 protein

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_008126.1 RefSeqGene

      Range
      5001..58358
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_144596.2NP_653197.2  tetratricopeptide repeat protein 8 isoform A

      Status: REVIEWED

      Description
      Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (A). Variants lacking the second exon of this transcript have been associated with nonsyndromic retinitis pigmentosa.
      Source sequence(s)
      AK093891, AK124675, BC001563, BG330023, BX247959
      Consensus CDS
      CCDS32137.1
      UniProtKB/TrEMBL
      B3KSL8
      UniProtKB/TrEMBL
      Q86U25
      UniProtKB/Swiss-Prot
      Q8TAM2
      Related
      ENSP00000370031, OTTHUMP00000244656, ENST00000380656, OTTHUMT00000410866
      Conserved Domains (1) summary
      cd00189
      Location:230322
      Blast Score: 138
      TPR; Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, ...
    2. NM_198309.2NP_938051.1  tetratricopeptide repeat protein 8 isoform B

      Status: REVIEWED

      Description
      Transcript Variant: This variant (2) lacks an in-frame exon, compared to variant 1, resulting in a shorter protein (isoform B), as compared to isoform A.
      Source sequence(s)
      AK093891, BC001563, BC026351, BX247959
      Consensus CDS
      CCDS9885.1
      UniProtKB/TrEMBL
      B3KSL8
      UniProtKB/TrEMBL
      Q86U25
      UniProtKB/Swiss-Prot
      Q8TAM2
      Related
      ENSP00000339486, OTTHUMP00000244652, ENST00000345383, OTTHUMT00000410861
      Conserved Domains (2) summary
      cd00189
      Location:220312
      Blast Score: 137
      TPR; Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, ...
      cl02429
      Location:388487
      Blast Score: 85
      TPR; Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, ...
    3. NM_198310.2NP_938052.1  tetratricopeptide repeat protein 8 isoform C

      Status: REVIEWED

      Description
      Transcript Variant: This variant (3) lacks two in-frame exons, compared to variant 1, resulting in a shorter protein (isoform C), as compared to isoform A.
      Source sequence(s)
      AK093891, BC001563, BC026351
      Consensus CDS
      CCDS9886.1
      UniProtKB/TrEMBL
      B3KSL8
      UniProtKB/Swiss-Prot
      Q8TAM2
      Related
      ENSP00000298324, OTTHUMP00000244653, ENST00000346301, OTTHUMT00000410863
      Conserved Domains (2) summary
      cd00189
      Location:190282
      Blast Score: 137
      TPR; Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, ...
      cl02429
      Location:358457
      Blast Score: 85
      TPR; Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, ...

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 104

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p10 Primary Assembly

    Genomic

    1. NC_000014.8 Reference GRCh37.p10 Primary Assembly

      Range
      89290978..89344335
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000146.1 Alternate HuRef

      Range
      69465840..69519171
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate CHM1_1.0

    Genomic

    1. NC_018925.1 Alternate CHM1_1.0

      Range
      70275630..70329070
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

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