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Zfp36l1 zinc finger protein 36, C3H type-like 1 [ Mus musculus (house mouse) ]

Gene ID: 12192, updated on 15-May-2016
Official Symbol
Zfp36l1provided by MGI
Official Full Name
zinc finger protein 36, C3H type-like 1provided by MGI
Primary source
MGI:MGI:107946
See related
Ensembl:ENSMUSG00000021127
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Brf1; ERF1; cMG1; Berg36; TIS11b; AW742437; AW743212; D530020L18Rik
Orthologs
Location:
12; 12 C3
Exon count:
2
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 12 NC_000078.6 (80107760..80113013, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 12 NC_000078.5 (81208747..81214000, complement)

Chromosome 12 - NC_000078.6Genomic Context describing neighboring genes Neighboring gene predicted gene 8275 Neighboring gene predicted gene, 36660 Neighboring gene predicted gene, 36834 Neighboring gene RIKEN cDNA 2310015A10 gene Neighboring gene predicted gene, 36892

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
AU-rich element binding ISO
Inferred from Sequence Orthology
more info
 
DNA binding IEA
Inferred from Electronic Annotation
more info
 
mRNA binding ISO
Inferred from Sequence Orthology
more info
PubMed 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
poly(A) RNA binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
T cell differentiation in thymus IGI
Inferred from Genetic Interaction
more info
PubMed 
apoptotic process IMP
Inferred from Mutant Phenotype
more info
PubMed 
cell proliferation IMP
Inferred from Mutant Phenotype
more info
PubMed 
chorio-allantoic fusion IMP
Inferred from Mutant Phenotype
more info
PubMed 
embryonic organ development IMP
Inferred from Mutant Phenotype
more info
PubMed 
heart development IMP
Inferred from Mutant Phenotype
more info
PubMed 
mRNA catabolic process ISO
Inferred from Sequence Orthology
more info
PubMed 
multicellular organism growth IMP
Inferred from Mutant Phenotype
more info
PubMed 
neural tube development IMP
Inferred from Mutant Phenotype
more info
PubMed 
nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay IDA
Inferred from Direct Assay
more info
PubMed 
proepicardium development IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of mRNA stability ISO
Inferred from Sequence Orthology
more info
PubMed 
regulation of translation IMP
Inferred from Mutant Phenotype
more info
PubMed 
spongiotrophoblast layer development IMP
Inferred from Mutant Phenotype
more info
PubMed 
vasculogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
cytosol ISO
Inferred from Sequence Orthology
more info
PubMed 
nucleus IDA
Inferred from Direct Assay
more info
PubMed 
Preferred Names
zinc finger protein 36, C3H1 type-like 1
Names
butyrate response factor 1

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_007564.5NP_031590.1  zinc finger protein 36, C3H1 type-like 1

    See identical proteins and their annotated locations for NP_031590.1

    Status: PROVISIONAL

    Source sequence(s)
    AC108401
    Consensus CDS
    CCDS26010.1
    UniProtKB/Swiss-Prot
    P23950
    UniProtKB/TrEMBL
    Q543H2
    Related
    ENSMUSP00000021552, ENSMUST00000021552
    Conserved Domains (2) summary
    pfam00642
    Location:153177
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    pfam04553
    Location:1107
    Tis11B_N; Tis11B like protein, N terminus

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000078.6 Reference GRCm38.p3 C57BL/6J

    Range
    80107760..80113013 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Mm_Celera

Genomic

  1. AC_000034.1 Alternate Mm_Celera

    Range
    81572651..81577898 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)