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CBU_1934 DNA ligase D [ Coxiella burnetii RSA 493 ]

Gene ID: 1209847, updated on 16-May-2014
Gene symbol
CBU_1934
Gene description
DNA ligase D
Locus tag
CBU_1934
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Coxiella burnetii RSA 493 (strain: RSA 493)
Lineage
Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales; Coxiellaceae; Coxiella
Sequence:
NC_002971.3 (1850868..1853315)

NC_002971.3Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene Ku protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

  • Base excision repair, organism-specific biosystem (from KEGG)
    Base excision repair, organism-specific biosystemBase excision repair (BER) is the predominant DNA damage repair pathway for the processing of small base lesions, derived from oxidation and alkylation damages. BER is normally defined as DNA repair ...
  • Base excision repair, conserved biosystem (from KEGG)
    Base excision repair, conserved biosystemBase excision repair (BER) is the predominant DNA damage repair pathway for the processing of small base lesions, derived from oxidation and alkylation damages. BER is normally defined as DNA repair ...
  • Mismatch repair, organism-specific biosystem (from KEGG)
    Mismatch repair, organism-specific biosystemDNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preven...
  • Mismatch repair, conserved biosystem (from KEGG)
    Mismatch repair, conserved biosystemDNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preven...
  • Non-homologous end-joining, organism-specific biosystem (from KEGG)
    Non-homologous end-joining, organism-specific biosystemNonhomologous end joining (NHEJ) eliminates DNA double-strand breaks (DSBs) by direct ligation. NHEJ involves binding of the KU heterodimer to double-stranded DNA ends, recruitment of DNA-PKcs (MRX c...
  • Non-homologous end-joining, conserved biosystem (from KEGG)
    Non-homologous end-joining, conserved biosystemNonhomologous end joining (NHEJ) eliminates DNA double-strand breaks (DSBs) by direct ligation. NHEJ involves binding of the KU heterodimer to double-stranded DNA ends, recruitment of DNA-PKcs (MRX c...
  • Nucleotide excision repair, organism-specific biosystem (from KEGG)
    Nucleotide excision repair, organism-specific biosystemNucleotide excision repair (NER) is a mechanism to recognize and repair bulky DNA damage caused by compounds, environmental carcinogens, and exposure to UV-light. In humans hereditary defects in the ...
  • Nucleotide excision repair, conserved biosystem (from KEGG)
    Nucleotide excision repair, conserved biosystemNucleotide excision repair (NER) is a mechanism to recognize and repair bulky DNA damage caused by compounds, environmental carcinogens, and exposure to UV-light. In humans hereditary defects in the ...

Gene Ontology Provided by TIGR

Function Evidence Code Pubs
DNA ligase (ATP) activity ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
Process Evidence Code Pubs
DNA recombination ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
DNA repair ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
DNA replication ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_002971.3 

    Range
    1850868..1853315
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_820911.2 DNA ligase D [Coxiella burnetii RSA 493]

    See proteins identical to NP_820911.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q83AG5
    Conserved Domains (5) summary
    TIGR02777
    Location:6159
    Blast Score: 707
    LigD_PE_dom; DNA ligase D, 3'-phosphoesterase domain
    cd07971
    Location:396511
    Blast Score: 461
    OBF_DNA_ligase_LigD; The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase LigD is a DNA-binding module that is part of the catalytic core unit
    cd07906
    Location:208394
    Blast Score: 575
    Adenylation_DNA_ligase_LigD_LigC; Adenylation domain of Mycobacterium tuberculosis LigD and LigC-like ATP-dependent DNA ligases
    PRK05972
    Location:5810
    Blast Score: 2616
    ligD; ATP-dependent DNA ligase; Reviewed
    cd04862
    Location:545770
    Blast Score: 1006
    PaeLigD_Pol_like; PaeLigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for ...