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    TPP1 tripeptidyl peptidase I [ Homo sapiens (human) ]

    Gene ID: 1200, updated on 16-Jun-2013
    Official Symbol
    TPP1provided by HGNC
    Official Full Name
    tripeptidyl peptidase Iprovided by HGNC
    Primary source
    HGNC:2073
    Locus tag
    GIG1
    See related
    Ensembl:ENSG00000166340; HPRD:06415; MIM:607998; Vega:OTTHUMG00000133404
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    CLN2; GIG1; LPIC; TPP-1
    Summary
    This gene encodes a member of the sedolisin family of serine proteases. The protease functions in the lysosome to cleave N-terminal tripeptides from substrates, and has weaker endopeptidase activity. It is synthesized as a catalytically-inactive enzyme which is activated and auto-proteolyzed upon acidification. Mutations in this gene result in late-infantile neuronal ceroid lipofuscinosis, which is associated with the failure to degrade specific neuropeptides and a subunit of ATP synthase in the lysosome. [provided by RefSeq, Jul 2008]
    Location :
    11p15
    Sequence :
    Chromosome: 11; NC_000011.9 (6633997..6640692, complement)
    See TPP1 in Epigenomics, MapViewer

    Chromosome 11 - NC_000011.9Genomic Context describing neighboring genes Neighboring gene ribosomal RNA processing 8, methyltransferase, homolog (yeast) Neighboring gene integrin-linked kinase Neighboring gene TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 30kDa Neighboring gene dachsous 1 (Drosophila) Neighboring gene mitochondrial ribosomal protein L17

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Ceroid lipofuscinosis, neuronal, 2

    Summary from GeneReviews: Neuronal Ceroid-Lipofuscinosis Go to GeneReviews

    Disease Characteristics
    The neuronal ceroid-lipofuscinoses (NCLs) are a group of inherited, neurodegenerative, lysosomal-storage disorders characterized by progressive intellectual and motor deterioration, seizures, and early death. Visual loss is a feature of most forms. Phenotypes have been characterized clinically by age of onset and order of appearance of the clinical features: infantile neuronal ceroid-lipofuscinosis (INCL, Santavuori-Haltia), late-infantile (LINCL, Jansky-Bielschowsky), juvenile (JNCL, Batten disease, Spielmeyer-Vogt), adult (ANCL, Kuf's disease), and Northern epilepsy (NE, progressive epilepsy with intellectual disability). Children with INCL are normal at birth; symptoms usually present acutely between ages six and 24 months. Initial signs include: delayed development, myoclonic jerks and/or seizures, deceleration of head growth, and specific electroencephalographic (EEG) changes. Affected infants develop retinal blindness and seizures by age two years, followed by progressive intellectual disability. The first symptoms of LINCL typically appear between ages two and four years, usually starting with epilepsy, followed by regression of developmental milestones, dementia, ataxia, and extrapyramidal and pyramidal signs. Visual impairment typically appears at age four to six years and rapidly progresses to blindness. Life expectancy ranges from age six years to older than 40 years. The onset of JNCL is usually between ages four and ten years. Rapidly progressing visual loss resulting in total blindness within two to four years is often the first clinical sign. Epilepsy with generalized tonic-clonic seizures, complex-partial seizures, or myoclonic seizures typically appears between ages five and 18 years. Life expectancy ranges from the late teens to the 30s. Initial signs and symptoms of ANCL usually appear around age 30 years, with death occurring about ten years later. Affected individuals have either progressive myoclonic epilepsy or behavior abnormalities; and all have dementia, ataxia, and late-occurring pyramidal and extrapyramidal signs. Northern epilepsy is characterized by tonic-clonic or complex-partial seizures, intellectual disability, and motor dysfunction. Onset occurs between ages two and ten years.
    Diagnosis Testing
    The diagnosis of an NCL is often based on assay of enzyme activity and/or molecular genetic testing, and, in some instances, on electron microscopy (EM) of biopsied tissues. The diagnostic testing strategy in a proband depends on the age of onset. Mutations in eight genes (PPT1, TPP1, CLN3, CLN5, CLN6, MFSD8, CLN8, and CTSD) are known to cause NCL.
    Genetic Counseling
    The NCLs are inherited in an autosomal recessive manner with the exception of ANCL, which can be inherited in either an autosomal recessive or an autosomal dominant manner. The parents of a child with an autosomal recessive form of NCL are obligate heterozygotes, and, therefore, carry one mutant allele. Heterozygotes have no symptoms. At conception, each sib of such a proband has a 25% chance of being affected, a 50% chance of being an asymptomatic carrier, and a 25% chance of being unaffected and not a carrier. Carrier testing for at-risk relatives is possible if the disease-causing mutations in the family are known. Prenatal testing for pregnancies at increased risk is possible if the proband has documented deficient enzyme activity of either PPT1 or TPP-1 or if the disease-causing mutation(s) have been identified in the family.
    References
    Products Interactant Other Gene Complex Source Pubs Description
    O14773 P08949 NMB    HPRD  PubMed  
    O14773 O14746 TERT    HPRD  PubMed  
    BioGRID:107611 BioGRID:109534 DNAJA1    BioGRID  PubMed Co-fractionation 
    BioGRID:107611 BioGRID:109428 HNRNPH1    BioGRID  PubMed Co-fractionation 
    BioGRID:107611 BioGRID:200268 Htt    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:107611 BioGRID:113164 UBC    BioGRID  PubMed Affinity Capture-MS 
    • Activation of Chaperone Genes by XBP1(S), organism-specific biosystem (from REACTOME)
      Activation of Chaperone Genes by XBP1(S), organism-specific biosystemXbp-1 (S) binds the sequence CCACG in ER Stress Responsive Elements (ERSE, consensus sequence CCAAT (N)9 CCACG) located upstream from many genes. The ubiquitous transcription factor NF-Y, a heterotri...
    • Activation of Chaperones by IRE1alpha, organism-specific biosystem (from REACTOME)
      Activation of Chaperones by IRE1alpha, organism-specific biosystemIRE1-alpha is a single-pass transmembrane protein that resides in the endoplasmic reticulum (ER) membrane. The C-terminus of IRE1-alpha is located in the cytosol; the N-terminus is located in the ER ...
    • Lysosome, organism-specific biosystem (from KEGG)
      Lysosome, organism-specific biosystemLysosomes are membrane-delimited organelles in animal cells serving as the cell's main digestive compartment to which all sorts of macromolecules are delivered for degradation. They contain more than...
    • Lysosome, conserved biosystem (from KEGG)
      Lysosome, conserved biosystemLysosomes are membrane-delimited organelles in animal cells serving as the cell's main digestive compartment to which all sorts of macromolecules are delivered for degradation. They contain more than...
    • Metabolism of proteins, organism-specific biosystem (from REACTOME)
      Metabolism of proteins, organism-specific biosystemProtein metabolism comprises the pathways of translation, post-translational modification and protein folding.
    • Unfolded Protein Response, organism-specific biosystem (from REACTOME)
      Unfolded Protein Response, organism-specific biosystemThe Unfolded Protein Response (UPR) is a regulatory system that protects the Endoplasmic Reticulum (ER) from overload. The UPR is provoked by the accumulation of improperly folded protein in the ER d...

    Markers

    Homology

    Clone Names

    • MGC21297

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    endopeptidase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    endopeptidase activity IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    peptidase activity IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    peptide binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    serine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
     
    serine-type peptidase activity IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    tripeptidyl-peptidase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    tripeptidyl-peptidase activity IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Process Evidence Code Pubs
    activation of signaling protein activity involved in unfolded protein response TAS
    Traceable Author Statement
    more info
     
    bone resorption IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    cell death IEA
    Inferred from Electronic Annotation
    more info
     
    cellular protein metabolic process TAS
    Traceable Author Statement
    more info
     
    endoplasmic reticulum unfolded protein response TAS
    Traceable Author Statement
    more info
     
    lipid metabolic process TAS
    Traceable Author Statement
    more info
    PubMed 
    lysosome organization ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    nervous system development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    neuromuscular process controlling balance ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    peptide catabolic process IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    protein catabolic process NAS
    Non-traceable Author Statement
    more info
    PubMed 
    proteolysis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    lysosomal lumen TAS
    Traceable Author Statement
    more info
     
    lysosome IDA
    Inferred from Direct Assay
    more info
    PubMed 
    lysosome IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    melanosome IEA
    Inferred from Electronic Annotation
    more info
     
    mitochondrion IEA
    Inferred from Electronic Annotation
    more info
     
    Preferred Names
    tripeptidyl-peptidase 1
    Names
    tripeptidyl-peptidase 1
    tripeptidyl aminopeptidase
    growth-inhibiting protein 1
    cell growth-inhibiting gene 1 protein
    lysosomal pepstatin insensitive protease
    NP_000382.3

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_008653.1 RefSeqGene

      Range
      5001..11696
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_000391.3NP_000382.3  tripeptidyl-peptidase 1 preproprotein

      Status: REVIEWED

      Source sequence(s)
      AC091564, AI023962, BC014863, BP279860, BP287220
      Consensus CDS
      CCDS7770.1
      UniProtKB/Swiss-Prot
      O14773
      Related
      ENSP00000299427, OTTHUMP00000164588, ENST00000299427, OTTHUMT00000257261
      Conserved Domains (2) summary
      cd04056
      Location:199557
      Blast Score: 913
      Peptidases_S53; Peptidase domain in the S53 family
      cd11377
      Location:34173
      Blast Score: 384
      Pro-peptidase_S53; Activation domain of S53 peptidases

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 104

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p10 Primary Assembly

    Genomic

    1. NC_000011.9 Reference GRCh37.p10 Primary Assembly

      Range
      6633997..6640692, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000143.1 Alternate HuRef

      Range
      6292929..6299623, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate CHM1_1.0

    Genomic

    1. NC_018922.1 Alternate CHM1_1.0

      Range
      6548167..6554861, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

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