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Atoh1 atonal bHLH transcription factor 1 [ Mus musculus (house mouse) ]

Gene ID: 11921, updated on 8-May-2016
Official Symbol
Atoh1provided by MGI
Official Full Name
atonal bHLH transcription factor 1provided by MGI
Primary source
MGI:MGI:104654
See related
Ensembl:ENSMUSG00000073043 Vega:OTTMUSG00000057064
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Hath1; Math1; MATH-1; bHLHa14
Orthologs
Location:
6 C1; 6 30.03 cM
Exon count:
1
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 6 NC_000072.6 (64729146..64731243)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (64679140..64681237)

Chromosome 6 - NC_000072.6Genomic Context describing neighboring genes Neighboring gene glutamate receptor, ionotropic, delta 2 Neighboring gene transmembrane protein 258 pseudogene Neighboring gene predicted gene, 35851 Neighboring gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 pseudogene Neighboring gene lurcher transcript 1

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Gene Ontology Provided by MGI

Process Evidence Code Pubs
Notch signaling pathway IDA
Inferred from Direct Assay
more info
PubMed 
auditory receptor cell differentiation IDA
Inferred from Direct Assay
more info
PubMed 
auditory receptor cell differentiation IMP
Inferred from Mutant Phenotype
more info
PubMed 
auditory receptor cell fate determination IDA
Inferred from Direct Assay
more info
PubMed 
auditory receptor cell fate specification IMP
Inferred from Mutant Phenotype
more info
PubMed 
axon guidance IMP
Inferred from Mutant Phenotype
more info
PubMed 
brain development IMP
Inferred from Mutant Phenotype
more info
PubMed 
cell differentiation IMP
Inferred from Mutant Phenotype
more info
PubMed 
cerebral cortex development IMP
Inferred from Mutant Phenotype
more info
PubMed 
inner ear development IMP
Inferred from Mutant Phenotype
more info
PubMed 
inner ear morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
multicellular organism development IEA
Inferred from Electronic Annotation
more info
 
negative regulation of apoptotic process IMP
Inferred from Mutant Phenotype
more info
PubMed 
nervous system development IEA
Inferred from Electronic Annotation
more info
 
neuron differentiation IMP
Inferred from Mutant Phenotype
more info
PubMed 
neuron migration IMP
Inferred from Mutant Phenotype
more info
PubMed 
positive regulation of auditory receptor cell differentiation IDA
Inferred from Direct Assay
more info
PubMed 
positive regulation of inner ear receptor cell differentiation IMP
Inferred from Mutant Phenotype
more info
PubMed 
positive regulation of neuron differentiation IDA
Inferred from Direct Assay
more info
PubMed 
positive regulation of transcription from RNA polymerase II promoter IDA
Inferred from Direct Assay
more info
PubMed 
positive regulation of transcription from RNA polymerase II promoter IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of neuron differentiation IDA
Inferred from Direct Assay
more info
PubMed 
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
nucleus IDA
Inferred from Direct Assay
more info
PubMed 
Preferred Names
protein atonal homolog 1
Names
atonal homolog 1
helix-loop-helix protein mATH-1

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_007500.4NP_031526.1  protein atonal homolog 1

    See identical proteins and their annotated locations for NP_031526.1

    Status: PROVISIONAL

    Source sequence(s)
    BC010820
    Consensus CDS
    CCDS20203.1
    UniProtKB/Swiss-Prot
    P48985
    Related
    ENSMUSP00000098903, OTTMUSP00000073605, ENSMUST00000101351, OTTMUST00000140551
    Conserved Domains (1) summary
    cd00083
    Location:155213
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000072.6 Reference GRCm38.p3 C57BL/6J

    Range
    64729146..64731243
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Mm_Celera

Genomic

  1. AC_000028.1 Alternate Mm_Celera

    Range
    66856661..66858758
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)