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Atf1 activating transcription factor 1 [ Mus musculus (house mouse) ]

Gene ID: 11908, updated on 28-May-2016
Official Symbol
Atf1provided by MGI
Official Full Name
activating transcription factor 1provided by MGI
Primary source
MGI:MGI:1298366
See related
Ensembl:ENSMUSG00000023027 Vega:OTTMUSG00000036768
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Orthologs
Location:
15; 15 F3
Exon count:
9
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 15 NC_000081.6 (100227859..100261248)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 15 NC_000081.5 (100058290..100091679)

Chromosome 15 - NC_000081.6Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 2310068J16 gene Neighboring gene La ribonucleoprotein domain family, member 4 Neighboring gene disco interacting protein 2 homolog B Neighboring gene transmembrane (C-terminal) protease, serine 12 Neighboring gene predicted gene, 33666

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Markers

Homology

Gene Ontology Provided by MGI

Process Evidence Code Pubs
cellular protein complex assembly ISO
Inferred from Sequence Orthology
more info
 
positive regulation of DNA replication ISO
Inferred from Sequence Orthology
more info
 
positive regulation of neuron projection development ISO
Inferred from Sequence Orthology
more info
 
positive regulation of transcription from RNA polymerase II promoter ISO
Inferred from Sequence Orthology
more info
 
regulation of transcription from RNA polymerase II promoter IEA
Inferred from Electronic Annotation
more info
 
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
ATF1-ATF4 transcription factor complex IDA
Inferred from Direct Assay
more info
PubMed 
ATF1-ATF4 transcription factor complex ISO
Inferred from Sequence Orthology
more info
 
nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
nucleus ISO
Inferred from Sequence Orthology
more info
PubMed 
transcription factor complex IDA
Inferred from Direct Assay
more info
PubMed 
transcription factor complex ISO
Inferred from Sequence Orthology
more info
 
Preferred Names
cyclic AMP-dependent transcription factor ATF-1
Names
TCR-ATF1
cAMP-dependent transcription factor ATF-1

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_007497.3NP_031523.3  cyclic AMP-dependent transcription factor ATF-1

    See identical proteins and their annotated locations for NP_031523.3

    Status: VALIDATED

    Source sequence(s)
    AC124479, AK010428, BY733806
    Consensus CDS
    CCDS27832.1
    UniProtKB/Swiss-Prot
    P81269
    UniProtKB/TrEMBL
    Q9CWS2
    Related
    ENSMUSP00000023769, OTTMUSP00000052451, ENSMUST00000023769, OTTMUST00000094349
    Conserved Domains (2) summary
    pfam02173
    Location:5083
    pKID; pKID domain
    cd14690
    Location:213267
    bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000081.6 Reference GRCm38.p3 C57BL/6J

    Range
    100227859..100261248
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006520351.2XP_006520414.1  

    See identical proteins and their annotated locations for XP_006520414.1

    UniProtKB/Swiss-Prot
    P81269
    Conserved Domains (2) summary
    pfam02173
    Location:5083
    pKID; pKID domain
    cd14690
    Location:213267
    bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
  2. XM_006520352.2XP_006520415.1  

    See identical proteins and their annotated locations for XP_006520415.1

    UniProtKB/Swiss-Prot
    P81269
    Conserved Domains (2) summary
    pfam02173
    Location:5083
    pKID; pKID domain
    cd14690
    Location:213267
    bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain

Alternate Mm_Celera

Genomic

  1. AC_000037.1 Alternate Mm_Celera

    Range
    102384029..102412594
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)