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PSPTO_RS02135 GGDEF and EAL domain-containing protein [ Pseudomonas syringae pv. tomato str. DC3000 ]

Gene ID: 1182015, updated on 31-Jan-2024

Summary

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Gene symbol
PSPTO_RS02135
Gene description
GGDEF and EAL domain-containing protein
Locus tag
PSPTO_RS02135
Gene type
protein coding
Organism
Pseudomonas syringae pv. tomato str. DC3000 (strain: DC3000, pathovar: tomato, type-material: reference strain of Pseudomonas syringae group genomosp. 3)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas
Old locus tag
PSPTO0406; PSPTO_0406
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Genomic context

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Sequence:
NC_004578.1 (449550..452243, complement)

NC_004578.1Genomic Context describing neighboring genes Neighboring gene 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ Neighboring gene peptide-methionine (S)-S-oxide reductase MsrA Neighboring gene multidrug transporter subunit MdtD Neighboring gene metallopeptidase TldD-related protein Neighboring gene TldD/PmbA family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_004578.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000. Buell CR, et al. Proc Natl Acad Sci U S A, 2003 Sep 2. PMID 12928499, Free PMC Article

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
GGDEF and EAL domain-containing protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_004578.1 Reference assembly

    Range
    449550..452243 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_007244549.1 MULTISPECIES: GGDEF and EAL domain-containing protein [Pseudomonas]

    See identical proteins and their annotated locations for WP_007244549.1

    UniProtKB/TrEMBL
    A0A2S3V8F9, A0A3M4EUU1, A0A3M6BPW8, Q88AI4
    Conserved Domains (3) summary
    PRK10060
    Location:454 → 895
    PRK10060; cyclic di-GMP phosphodiesterase
    pfam01590
    Location:193 → 331
    GAF; GAF domain
    pfam13426
    Location:355 → 457
    PAS_9; PAS domain
Nucleotide Protein
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