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SFHH103_02797 putative ATP-dependent DNA ligase protein [ Sinorhizobium fredii HH103 ]

Gene ID: 11814800, updated on 6-Jul-2014
Gene symbol
SFHH103_02797
Gene description
putative ATP-dependent DNA ligase protein
Locus tag
SFHH103_02797
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sinorhizobium fredii HH103 (strain: HH103)
Lineage
Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium
Sequence:
NC_016812.1 (3010523..3013120)

NC_016812.1Genomic Context describing neighboring genes Neighboring gene TolQ protein uptake system component Neighboring gene hypothetical protein Neighboring gene putative 4-hydroxybenzoyl-CoA thioesterase protein Neighboring gene UDP-sulfoquinovose synthase Neighboring gene putative glycosyl transferase, family 8

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

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    Base excision repair, organism-specific biosystemBase excision repair (BER) is the predominant DNA damage repair pathway for the processing of small base lesions, derived from oxidation and alkylation damages. BER is normally defined as DNA repair ...
  • Base excision repair, conserved biosystem (from KEGG)
    Base excision repair, conserved biosystemBase excision repair (BER) is the predominant DNA damage repair pathway for the processing of small base lesions, derived from oxidation and alkylation damages. BER is normally defined as DNA repair ...
  • Mismatch repair, organism-specific biosystem (from KEGG)
    Mismatch repair, organism-specific biosystemDNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preven...
  • Mismatch repair, conserved biosystem (from KEGG)
    Mismatch repair, conserved biosystemDNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preven...
  • Non-homologous end-joining, organism-specific biosystem (from KEGG)
    Non-homologous end-joining, organism-specific biosystemNonhomologous end joining (NHEJ) eliminates DNA double-strand breaks (DSBs) by direct ligation. NHEJ involves binding of the KU heterodimer to double-stranded DNA ends, recruitment of DNA-PKcs (MRX c...
  • Non-homologous end-joining, conserved biosystem (from KEGG)
    Non-homologous end-joining, conserved biosystemNonhomologous end joining (NHEJ) eliminates DNA double-strand breaks (DSBs) by direct ligation. NHEJ involves binding of the KU heterodimer to double-stranded DNA ends, recruitment of DNA-PKcs (MRX c...
  • Nucleotide excision repair, organism-specific biosystem (from KEGG)
    Nucleotide excision repair, organism-specific biosystemNucleotide excision repair (NER) is a mechanism to recognize and repair bulky DNA damage caused by compounds, environmental carcinogens, and exposure to UV-light. In humans hereditary defects in the ...
  • Nucleotide excision repair, conserved biosystem (from KEGG)
    Nucleotide excision repair, conserved biosystemNucleotide excision repair (NER) is a mechanism to recognize and repair bulky DNA damage caused by compounds, environmental carcinogens, and exposure to UV-light. In humans hereditary defects in the ...
Names
putative ATP-dependent DNA ligase protein

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_016812.1 

    Range
    3010523..3013120
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_005190114.1 putative ATP-dependent DNA ligase protein [Sinorhizobium fredii HH103]

    See proteins identical to YP_005190114.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    G9ABJ8
    Conserved Domains (5) summary
    TIGR02777
    Location:8165
    LigD_PE_dom; DNA ligase D, 3'-phosphoesterase domain
    cd07971
    Location:424538
    OBF_DNA_ligase_LigD; The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase LigD is a DNA-binding module that is part of the catalytic core unit
    cd07906
    Location:241423
    Adenylation_DNA_ligase_LigD_LigC; Adenylation domain of Mycobacterium tuberculosis LigD and LigC-like ATP-dependent DNA ligases
    PRK05972
    Location:3859
    ligD; ATP-dependent DNA ligase; Reviewed
    cd04862
    Location:593820
    PaeLigD_Pol_like; PaeLigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for ...