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Smu1 smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans) [ Rattus norvegicus (Norway rat) ]

Gene ID: 117541, updated on 26-May-2016
Official Symbol
Smu1provided by RGD
Official Full Name
smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)provided by RGD
Primary source
RGD:620694
See related
Ensembl:ENSRNOG00000007671
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus
Also known as
Bwd; Smu-1
Summary
involved in protein-protein interaction in the brain [RGD, Feb 2006]
Orthologs
Location:
5q22
Exon count:
12
Annotation release Status Assembly Chr Location
105 current Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (57042743..57061313, complement)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 5 NC_005104.3 (61576122..61595202, complement)

Chromosome 5 - NC_005104.4Genomic Context describing neighboring genes Neighboring gene aprataxin Neighboring gene DnaJ heat shock protein family (Hsp40) member A1 Neighboring gene microRNA 207 Neighboring gene beta-1,4-galactosyltransferase 1 Neighboring gene serine peptidase inhibitor, Kazal type 4

Markers

Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
nucleus IEA
Inferred from Electronic Annotation
more info
 
Preferred Names
WD40 repeat-containing protein SMU1
Names
brain-enriched WD repeat-containing protein
brain-enriched WD-repeat protein
homolog of C. elegans smu-1
smu-1 suppressor of mec-8 and unc-52 protein homolog
suppressor of Mec and Unc defects 1 homolog

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_057195.1NP_476543.1  WD40 repeat-containing protein SMU1

    See identical proteins and their annotated locations for NP_476543.1

    Status: PROVISIONAL

    Source sequence(s)
    AY029526
    UniProtKB/Swiss-Prot
    Q99M63
    Related
    ENSRNOP00000010463, ENSRNOT00000010464
    Conserved Domains (4) summary
    smart00667
    Location:538
    LisH; Lissencephaly type-1-like homology motif
    smart00668
    Location:4090
    CTLH; C-terminal to LisH motif
    COG2319
    Location:212513
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:205512
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005104.4 Reference Rnor_6.0 Primary Assembly

    Range
    57042743..57061313 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Rn_Celera

Genomic

  1. AC_000073.1 Alternate Rn_Celera

    Range
    54468882..54487453 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)