Sign in to NCBI

Display Settings:

Format

Send to:

Choose Destination
We are sorry, but NCBI web applications do not support your browser and may not function properly. More information

    DND132_2805 periplasmic solute binding protein [ Desulfovibrio desulfuricans ND132 ]

    Gene ID: 11741036, updated on 17-Jan-2013
    Gene symbol
    DND132_2805
    Gene description
    periplasmic solute binding protein
    Locus tag
    DND132_2805
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Desulfovibrio desulfuricans ND132 (strain: ND132, old-name: Desulfovibrio sp. ND132)
    Lineage
    Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio
    Sequence :
    NC_016803.1 (3126560..3127480)

    NC_016803.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene ferric uptake regulator family protein Neighboring gene hypothetical protein

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details

    Related articles in PubMed

    1. Genome sequence of the mercury-methylating strain Desulfovibrio desulfuricans ND132. Brown SD, et al. J Bacteriol, 2011 Apr. PMID 21357488.

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
    • ABC transporters, organism-specific biosystem (from KEGG)
      ABC transporters, organism-specific biosystemThe ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of ...
    • ABC transporters, conserved biosystem (from KEGG)
      ABC transporters, conserved biosystemThe ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of ...
    • Zinc transport system, organism-specific biosystem (from KEGG)
      Zinc transport system, organism-specific biosystemStructural complex; Environmental information processing; Metallic cation, iron-siderophore and vitamin B12 transport system
    Names
    periplasmic solute binding protein
    YP_005168811.1
    • PFAM: periplasmic solute binding protein~KEGG: dba:Dbac_0624 periplasmic solute binding protein

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_016803.1

      Range
      3126560..3127480
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_005168811.1 periplasmic solute binding protein [Desulfovibrio desulfuricans ND132]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      F0JJA9
      Conserved Domains (2) summary
      cd01018
      Location:34 – 303
      Blast Score: 721
      ZntC; Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding ...
      pfam01297
      Location:34 – 305
      Blast Score: 562
      SBP_bac_9; Periplasmic solute binding protein family
    Nucleotide Protein
    Heading Accession and Version
    genomic CP003220.1 EGB16008.1
    Protein Accession Links
    GenPept Link UniProtKB Link
    ZP_08112123.1 GenPept

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

      Supplemental Content

      Table of contents

      Related information

      • BioProjects
        BioProjects related to a gene
      • BioSystems
        BioSystems
      • Conserved Domains
        Conserved Domain Database Links between Entrez Gene and Conserved Domain Database (CDD) are calculated from the domains annotated by the CDD group on Reference Sequence proteins.
      • Full text in PMC
        PMC links
      • Full text in PMC_nucleotide
        Full text in PubMedCentral identified from shared sequence links
      • Genome
        Genome records having the gene annotated on corresponding genomic reference sequence.
      • Nucleotide
        Link to related Nucleotide entry
      • Protein
        Link to related protein entry
      • PubMed
        Links between Gene and PubMed are the result of the following: 1. Manual curation within NCBI. Part of the process of generating a REVIEWED RefSeq is an analysis of the current literature. Papers that are seminal in defining the gene, its sequence, and its function are added to the record at that time. Alert users point out gaps or errors in papers associated with a Gene record. These messages are reviewed and implemented as required. 2. Integration of information from other public databases. Gene integrates gene-citation from resources external to NCBI such as model organism-specific databases, Gene Ontology (GO), groups curating interactions, and sequence databases. The assumption in using these source is that they report citations specific to a gene in a known species. Gene does not process citations from OMIM automatically, because many of citations in OMIM refer to studies of genes in species other than human.
      • PubMed(nucleotide/PMC)
        Citations in PubMed identified from shared sequence and PMC links.
      • RefSeq Proteins
        Link to Protein RefSeqs
      • Taxonomy
        Link to related taxonomy entry

      Links to other resources

      General information

      Related sites

      Feedback

      Subscription

      Recent activity

      Clear Turn Off Turn On

      Your browsing activity is empty.

      Activity recording is turned off.

      Turn recording back on

      See more...