Format

Send to:

Choose Destination

Hnrnpu heterogeneous nuclear ribonucleoprotein U [ Rattus norvegicus (Norway rat) ]

Gene ID: 117280, updated on 8-May-2016
Official Symbol
Hnrnpuprovided by RGD
Official Full Name
heterogeneous nuclear ribonucleoprotein Uprovided by RGD
Primary source
RGD:620372
See related
Ensembl:ENSRNOG00000033790
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus
Also known as
SN1; Hnrpu
Summary
may be involved in glutamate transport and synaptogenesis [RGD, Feb 2006]
Orthologs
Location:
13q26
Exon count:
16
Annotation release Status Assembly Chr Location
105 current Rnor_6.0 (GCF_000001895.5) 13 NC_005112.4 (96222095..96238850, complement)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 13 NC_005112.3 (100663218..100679960, complement)

Chromosome 13 - NC_005112.4Genomic Context describing neighboring genes Neighboring gene similar to 40S ribosomal protein S16 Neighboring gene basic transcription factor 3 pseudogene Neighboring gene COX20 cytochrome C oxidase assembly factor Neighboring gene hypothetical protein LOC682308 Neighboring gene EF-hand calcium binding domain 2 Neighboring gene EF-hand calcium-binding domain-containing protein 2-like

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
core promoter binding IDA
Inferred from Direct Assay
more info
PubMed 
core promoter binding ISO
Inferred from Sequence Orthology
more info
 
enhancer binding IDA
Inferred from Direct Assay
more info
PubMed 
poly(A) RNA binding IDA
Inferred from Direct Assay
more info
PubMed 
poly(A) RNA binding ISO
Inferred from Sequence Orthology
more info
 
poly(G) binding IDA
Inferred from Direct Assay
more info
PubMed 
ribonucleoprotein complex binding IPI
Inferred from Physical Interaction
more info
PubMed 
telomerase RNA binding IEA
Inferred from Electronic Annotation
more info
 
telomerase RNA binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
CRD-mediated mRNA stabilization IEA
Inferred from Electronic Annotation
more info
 
CRD-mediated mRNA stabilization ISO
Inferred from Sequence Orthology
more info
 
cardiac muscle cell development ISO
Inferred from Sequence Orthology
more info
 
cellular response to dexamethasone stimulus IDA
Inferred from Direct Assay
more info
PubMed 
circadian regulation of gene expression ISO
Inferred from Sequence Orthology
more info
 
negative regulation of telomere maintenance via telomerase IEA
Inferred from Electronic Annotation
more info
 
negative regulation of telomere maintenance via telomerase ISO
Inferred from Sequence Orthology
more info
 
osteoblast differentiation IEA
Inferred from Electronic Annotation
more info
 
osteoblast differentiation ISO
Inferred from Sequence Orthology
more info
 
positive regulation of DNA topoisomerase (ATP-hydrolyzing) activity IDA
Inferred from Direct Assay
more info
PubMed 
positive regulation of gene expression IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
CRD-mediated mRNA stability complex IEA
Inferred from Electronic Annotation
more info
 
CRD-mediated mRNA stability complex ISO
Inferred from Sequence Orthology
more info
 
catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 
catalytic step 2 spliceosome ISO
Inferred from Sequence Orthology
more info
 
cytoplasmic ribonucleoprotein granule IEA
Inferred from Electronic Annotation
more info
 
cytoplasmic ribonucleoprotein granule ISO
Inferred from Sequence Orthology
more info
 
intracellular ribonucleoprotein complex IDA
Inferred from Direct Assay
more info
PubMed 
intracellular ribonucleoprotein complex ISO
Inferred from Sequence Orthology
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 
membrane ISO
Inferred from Sequence Orthology
more info
 
nucleoplasm IEA
Inferred from Electronic Annotation
more info
 
nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
nucleus IDA
Inferred from Direct Assay
more info
PubMed 
nucleus ISO
Inferred from Sequence Orthology
more info
 
telomerase holoenzyme complex IEA
Inferred from Electronic Annotation
more info
 
colocalizes_with telomerase holoenzyme complex ISO
Inferred from Sequence Orthology
more info
 
viral nucleocapsid IEA
Inferred from Electronic Annotation
more info
 
Preferred Names
heterogeneous nuclear ribonucleoprotein U
Names
system N1 Na+ and H+-coupled glutamine transporter
transporter protein
transporter protein; system N1 Na+ and H+-coupled glutamine transporter

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_057139.2NP_476480.2  heterogeneous nuclear ribonucleoprotein U

    See identical proteins and their annotated locations for NP_476480.2

    Status: PROVISIONAL

    Source sequence(s)
    BC072529
    UniProtKB/TrEMBL
    Q6IMY8
    Related
    ENSRNOP00000046783, ENSRNOT00000044477
    Conserved Domains (3) summary
    smart00513
    Location:842
    SAP; Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation
    cd12884
    Location:262437
    SPRY_hnRNP; SPRY domain in heterogeneous nuclear ribonucleoprotein U-like (hnRNP) protein 1
    pfam13671
    Location:473617
    AAA_33; AAA domain

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005112.4 Reference Rnor_6.0 Primary Assembly

    Range
    96222095..96238850 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006250311.2XP_006250373.1  

    See identical proteins and their annotated locations for XP_006250373.1

    UniProtKB/TrEMBL
    A0A0G2JZ52
    Related
    ENSRNOP00000070912, ENSRNOT00000078061
    Conserved Domains (3) summary
    smart00513
    Location:842
    SAP; Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation
    cd12884
    Location:262437
    SPRY_hnRNP; SPRY domain in heterogeneous nuclear ribonucleoprotein U-like (hnRNP) protein 1
    pfam13671
    Location:473617
    AAA_33; AAA domain

RNA

  1. XR_359126.2 RNA Sequence

Alternate Rn_Celera

Genomic

  1. AC_000081.1 Alternate Rn_Celera

    Range
    89636544..89645333 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)