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Bdh1 3-hydroxybutyrate dehydrogenase, type 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 117099, updated on 26-May-2016
Official Symbol
Bdh1provided by RGD
Official Full Name
3-hydroxybutyrate dehydrogenase, type 1provided by RGD
Primary source
RGD:620131
See related
Ensembl:ENSRNOG00000001736
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus
Also known as
Bdh
Summary
mitochondrial membrane enzyme that is dependent on phosphatidylcholine for optimal function [RGD, Feb 2006]
Orthologs
Location:
11q22
Exon count:
9
Annotation release Status Assembly Chr Location
105 current Rnor_6.0 (GCF_000001895.5) 11 NC_005110.4 (72577547..72619429, complement)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 11 NC_005110.3 (75651886..75693764, complement)

Chromosome 11 - NC_005110.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102550974 Neighboring gene uncharacterized LOC102550747 Neighboring gene apolipoprotein D Neighboring gene protein phosphatase 1, regulatory (inhibitor) subunit 2

Markers

Homology

Clone Names

  • MGC94818

Gene Ontology Provided by RGD

Function Evidence Code Pubs
3-hydroxybutyrate dehydrogenase activity IDA
Inferred from Direct Assay
more info
PubMed 
3-hydroxybutyrate dehydrogenase activity IEA
Inferred from Electronic Annotation
more info
 
3-hydroxybutyrate dehydrogenase activity ISO
Inferred from Sequence Orthology
more info
 
3-hydroxybutyrate dehydrogenase activity TAS
Traceable Author Statement
more info
PubMed 
phospholipid binding IDA
Inferred from Direct Assay
more info
PubMed 
Process Evidence Code Pubs
adipose tissue development IEP
Inferred from Expression Pattern
more info
PubMed 
brain development IEP
Inferred from Expression Pattern
more info
PubMed 
liver development IEP
Inferred from Expression Pattern
more info
PubMed 
oxidation-reduction process IEA
Inferred from Electronic Annotation
more info
 
response to cadmium ion IEP
Inferred from Expression Pattern
more info
PubMed 
response to corticosterone IEP
Inferred from Expression Pattern
more info
PubMed 
response to drug IEP
Inferred from Expression Pattern
more info
PubMed 
response to estradiol IEP
Inferred from Expression Pattern
more info
PubMed 
response to ethanol IEP
Inferred from Expression Pattern
more info
PubMed 
response to growth hormone IEP
Inferred from Expression Pattern
more info
PubMed 
response to hormone IEP
Inferred from Expression Pattern
more info
PubMed 
response to insulin IEP
Inferred from Expression Pattern
more info
PubMed 
response to nutrient IEP
Inferred from Expression Pattern
more info
PubMed 
response to starvation IEP
Inferred from Expression Pattern
more info
PubMed 
response to toxic substance IEP
Inferred from Expression Pattern
more info
PubMed 
Component Evidence Code Pubs
cytoplasm ISO
Inferred from Sequence Orthology
more info
 
matrix side of mitochondrial inner membrane ISS
Inferred from Sequence or Structural Similarity
more info
 
mitochondrial inner membrane IDA
Inferred from Direct Assay
more info
PubMed 
mitochondrial inner membrane IEA
Inferred from Electronic Annotation
more info
 
mitochondrial inner membrane ISO
Inferred from Sequence Orthology
more info
 
mitochondrial matrix IEA
Inferred from Electronic Annotation
more info
 
mitochondrion ISO
Inferred from Sequence Orthology
more info
 
nucleoplasm IEA
Inferred from Electronic Annotation
more info
 
nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
Preferred Names
D-beta-hydroxybutyrate dehydrogenase, mitochondrial
Names
3-hydroxybutyrate dehydrogenase (heart, mitochondrial)
NP_446447.2

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_053995.3NP_446447.2  D-beta-hydroxybutyrate dehydrogenase, mitochondrial

    See identical proteins and their annotated locations for NP_446447.2

    Status: PROVISIONAL

    Source sequence(s)
    BC085916
    UniProtKB/Swiss-Prot
    P29147
    UniProtKB/TrEMBL
    A0A0G2JSH2
    Related
    ENSRNOP00000002366, ENSRNOT00000002366
    Conserved Domains (2) summary
    cd09805
    Location:57342
    type2_17beta_HSD-like_SDR_c; human 17beta-hydroxysteroid dehydrogenase type 2 (type 2 17beta-HSD)-like, classical (c) SDRs
    pfam00106
    Location:57224
    adh_short; short chain dehydrogenase

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005110.4 Reference Rnor_6.0 Primary Assembly

    Range
    72577547..72619429 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006248478.2XP_006248540.1  

    See identical proteins and their annotated locations for XP_006248540.1

    UniProtKB/Swiss-Prot
    P29147
    UniProtKB/TrEMBL
    A0A0G2JSH2
    Conserved Domains (2) summary
    cd09805
    Location:57342
    type2_17beta_HSD-like_SDR_c; human 17beta-hydroxysteroid dehydrogenase type 2 (type 2 17beta-HSD)-like, classical (c) SDRs
    pfam00106
    Location:57224
    adh_short; short chain dehydrogenase
  2. XM_008768691.1XP_008766913.1  

    See identical proteins and their annotated locations for XP_008766913.1

    UniProtKB/Swiss-Prot
    P29147
    UniProtKB/TrEMBL
    A0A0G2JSH2
    Conserved Domains (2) summary
    cd09805
    Location:57342
    type2_17beta_HSD-like_SDR_c; human 17beta-hydroxysteroid dehydrogenase type 2 (type 2 17beta-HSD)-like, classical (c) SDRs
    pfam00106
    Location:57224
    adh_short; short chain dehydrogenase

Alternate Rn_Celera

Genomic

  1. AC_000079.1 Alternate Rn_Celera

    Range
    68723790..68758851 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)