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Rps15a ribosomal protein S15a [ Rattus norvegicus (Norway rat) ]

Gene ID: 117053, updated on 8-May-2016
Official Symbol
Rps15aprovided by RGD
Official Full Name
ribosomal protein S15aprovided by RGD
Primary source
RGD:619939
See related
Ensembl:ENSRNOG00000018320 Vega:OTTRNOG00000002035
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus
Summary
40S ribosomal subunit protein [RGD, Feb 2006]
Orthologs
Location:
1q35
Exon count:
6
Annotation release Status Assembly Chr Location
105 current Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (187759855..187766734, complement)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 1 NC_005100.3 (194713988..194720867, complement)

Chromosome 1 - NC_005100.4Genomic Context describing neighboring genes Neighboring gene similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) Neighboring gene similar to eukaryotic translation initiation factor 3, subunit 12 Neighboring gene ADP-ribosylation factor like GTPase 6 interacting protein 1 Neighboring gene SMG1, nonsense mediated mRNA decay associated PI3K related kinase Neighboring gene uncharacterized LOC103691217

Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
poly(A) RNA binding ISO
Inferred from Sequence Orthology
more info
 
structural constituent of ribosome IBA
Inferred from Biological aspect of Ancestor
more info
 
structural constituent of ribosome ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
positive regulation of cell cycle ISO
Inferred from Sequence Orthology
more info
 
positive regulation of cell proliferation ISO
Inferred from Sequence Orthology
more info
 
response to virus ISO
Inferred from Sequence Orthology
more info
 
translation IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cytoplasm ISO
Inferred from Sequence Orthology
more info
 
cytosolic small ribosomal subunit IDA
Inferred from Direct Assay
more info
PubMed 
cytosolic small ribosomal subunit ISO
Inferred from Sequence Orthology
more info
 
extracellular exosome ISO
Inferred from Sequence Orthology
more info
 
membrane ISO
Inferred from Sequence Orthology
more info
 
mitochondrion ISO
Inferred from Sequence Orthology
more info
 

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_053982.1NP_446434.1  40S ribosomal protein S15a

    See identical proteins and their annotated locations for NP_446434.1

    Status: PROVISIONAL

    Source sequence(s)
    X77953
    UniProtKB/Swiss-Prot
    P62246
    Related
    ENSRNOP00000024678, ENSRNOT00000024678
    Conserved Domains (1) summary
    PTZ00158
    Location:1130
    PTZ00158; 40S ribosomal protein S15A; Provisional

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005100.4 Reference Rnor_6.0 Primary Assembly

    Range
    187759855..187766734 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006230097.1XP_006230159.1  

    See identical proteins and their annotated locations for XP_006230159.1

    UniProtKB/Swiss-Prot
    P62246
    Related
    ENSRNOP00000075906, OTTRNOP00000001961, ENSRNOT00000092282, OTTRNOT00000003380
    Conserved Domains (1) summary
    PTZ00158
    Location:1130
    PTZ00158; 40S ribosomal protein S15A; Provisional
  2. XM_006230098.1XP_006230160.1  

    See identical proteins and their annotated locations for XP_006230160.1

    UniProtKB/Swiss-Prot
    P62246
    Related
    ENSRNOP00000075747, OTTRNOP00000001962, ENSRNOT00000092513, OTTRNOT00000003381
    Conserved Domains (1) summary
    PTZ00158
    Location:1130
    PTZ00158; 40S ribosomal protein S15A; Provisional

Alternate Rn_Celera

Genomic

  1. AC_000069.1 Alternate Rn_Celera

    Range
    170206665..170212554 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)