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Rhbdl1 rhomboid, veinlet-like 1 (Drosophila) [ Rattus norvegicus (Norway rat) ]

Gene ID: 117025, updated on 26-May-2016
Official Symbol
Rhbdl1provided by RGD
Official Full Name
rhomboid, veinlet-like 1 (Drosophila)provided by RGD
Primary source
RGD:620699
See related
Ensembl:ENSRNOG00000019921
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus
Also known as
Rhbdl
Summary
has similarity to Drosophila Rhomboid, which mediates signalling in the Spitz/epidermal growth factor receptor/mitogen-activated protein kinase pathway [RGD, Feb 2006]
Orthologs
Location:
10q12
Exon count:
8
Annotation release Status Assembly Chr Location
105 current Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (15201503..15205885, complement)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 10 NC_005109.3 (15014446..15018579, complement)

Chromosome 10 - NC_005109.4Genomic Context describing neighboring genes Neighboring gene WD repeat domain 24 Neighboring gene jumonji domain containing 8 Neighboring gene STIP1 homology and U-box containing protein 1 Neighboring gene ras homolog family member T2 Neighboring gene WD repeat domain 90 Neighboring gene MAPK regulated co-repressor interacting protein 2

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
serine-type endopeptidase activity IBA
Inferred from Biological aspect of Ancestor
more info
 
serine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
protein processing IBA
Inferred from Biological aspect of Ancestor
more info
 
proteolysis IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
integral component of membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
mitochondrial inner membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
Preferred Names
rhomboid-related protein 1
Names
RRP
rhomboid protease 1
rhomboid-like protein 1
NP_001178751.1

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001191822.1NP_001178751.1  rhomboid-related protein 1

    See identical proteins and their annotated locations for NP_001178751.1

    Status: PROVISIONAL

    Source sequence(s)
    AABR07029217
    UniProtKB/TrEMBL
    G3V8M7
    Related
    ENSRNOP00000026971, ENSRNOT00000026971
    Conserved Domains (1) summary
    pfam01694
    Location:174328
    Rhomboid; Rhomboid family

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005109.4 Reference Rnor_6.0 Primary Assembly

    Range
    15201503..15205885 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006245894.2XP_006245956.1  

    Conserved Domains (1) summary
    pfam01694
    Location:176330
    Rhomboid; Rhomboid family
  2. XM_008767537.1XP_008765759.1  

    Conserved Domains (1) summary
    pfam01694
    Location:234388
    Rhomboid; Rhomboid family

Alternate Rn_Celera

Genomic

  1. AC_000078.1 Alternate Rn_Celera

    Range
    14523456..14526096 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)