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Atp5c1 ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 116550, updated on 8-May-2016
Official Symbol
Atp5c1provided by RGD
Official Full Name
ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1provided by RGD
Primary source
RGD:620011
See related
Ensembl:ENSRNOG00000019223
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus
Summary
plays a role in oxidative phosphorylation [RGD, Feb 2006]
Location:
17q12.3
Exon count:
10
Annotation release Status Assembly Chr Location
105 current Rnor_6.0 (GCF_000001895.5) 17 NC_005116.4 (72209320..72231566)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 17 NC_005116.3 (73895019..73917300)

Chromosome 17 - NC_005116.4Genomic Context describing neighboring genes Neighboring gene similar to inter-alpha (globulin) inhibitor H5 Neighboring gene inter-alpha-trypsin inhibitor heavy chain 2 Neighboring gene uncharacterized LOC102546431 Neighboring gene Kin17 DNA and RNA binding protein Neighboring gene TATA-box binding protein associated factor 3 Neighboring gene uncharacterized LOC102546306

Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

  • Homologs of the Atp5c1 gene: The Atp5c1 gene is conserved in human, chimpanzee, Rhesus monkey, dog, cow, mouse, chicken, zebrafish, fruit fly, mosquito, C.elegans, S.cerevisiae, K.lactis, E.gossypii, S.pombe, M.oryzae, N.crassa, A.thaliana, rice, and frog.
  • Map Viewer (Human, Mouse)

Gene Ontology Provided by RGD

Function Evidence Code Pubs
ATPase activity IMP
Inferred from Mutant Phenotype
more info
PubMed 
contributes_to ATPase activity ISO
Inferred from Sequence Orthology
more info
 
poly(A) RNA binding ISO
Inferred from Sequence Orthology
more info
 
proton-transporting ATP synthase activity, rotational mechanism IEA
Inferred from Electronic Annotation
more info
 
proton-transporting ATPase activity, rotational mechanism IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
ATP metabolic process IDA
Inferred from Direct Assay
more info
PubMed 
ATP synthesis coupled proton transport IEA
Inferred from Electronic Annotation
more info
 
oxidative phosphorylation NAS
Non-traceable Author Statement
more info
PubMed 
Component Evidence Code Pubs
extracellular exosome ISO
Inferred from Sequence Orthology
more info
 
membrane ISO
Inferred from Sequence Orthology
more info
 
mitochondrial envelope NAS
Non-traceable Author Statement
more info
PubMed 
mitochondrial inner membrane IDA
Inferred from Direct Assay
more info
PubMed 
mitochondrial inner membrane ISO
Inferred from Sequence Orthology
more info
 
mitochondrial proton-transporting ATP synthase complex IDA
Inferred from Direct Assay
more info
PubMed 
mitochondrial proton-transporting ATP synthase complex ISO
Inferred from Sequence Orthology
more info
 
mitochondrial proton-transporting ATP synthase complex, catalytic core F(1) IDA
Inferred from Direct Assay
more info
PubMed 
mitochondrion ISO
Inferred from Sequence Orthology
more info
 
myelin sheath ISO
Inferred from Sequence Orthology
more info
 
proton-transporting ATP synthase complex, catalytic core F(1) IDA
Inferred from Direct Assay
more info
PubMed 
proton-transporting ATP synthase complex, catalytic core F(1) IEA
Inferred from Electronic Annotation
more info
 
Preferred Names
ATP synthase subunit gamma, mitochondrial
Names
F-ATPase gamma subunit
NP_446277.1

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_053825.2NP_446277.1  ATP synthase subunit gamma, mitochondrial

    See identical proteins and their annotated locations for NP_446277.1

    Status: PROVISIONAL

    Source sequence(s)
    BC059158
    UniProtKB/TrEMBL
    Q6PCU0
    Related
    ENSRNOP00000061946, ENSRNOT00000064802
    Conserved Domains (1) summary
    cd12151
    Location:26294
    F1-ATPase_gamma; mitochondrial ATP synthase gamma subunit

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005116.4 Reference Rnor_6.0 Primary Assembly

    Range
    72209320..72231566
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006254230.2XP_006254292.1  

    See identical proteins and their annotated locations for XP_006254292.1

    Conserved Domains (1) summary
    cd12151
    Location:26294
    F1-ATPase_gamma; mitochondrial ATP synthase gamma subunit
  2. XM_006254229.2XP_006254291.1  

    See identical proteins and their annotated locations for XP_006254291.1

    Conserved Domains (1) summary
    cd12151
    Location:26294
    F1-ATPase_gamma; mitochondrial ATP synthase gamma subunit
  3. XM_006254231.2XP_006254293.1  

    UniProtKB/Swiss-Prot
    P35435
    Conserved Domains (1) summary
    cd12151
    Location:2270
    F1-ATPase_gamma; mitochondrial ATP synthase gamma subunit

Alternate Rn_Celera

Genomic

  1. AC_000085.1 Alternate Rn_Celera

    Range
    67910474..67932651
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)