These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in this
section to the one reported in Genomic regions, transcripts, and products above.
mRNA and Protein(s)
-
NM_001171815.1 → NP_001165286.1 RING finger protein 166 isoform 2
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) lacks an in-frame segment of the 5' coding region, compared to variant 1, resulting in an isoform (2) that is shorter than isoform 1.
- Source sequence(s)
-
AC138028, AI800509, AK057106, BI911983
- Consensus CDS
-
CCDS54057.1
- UniProtKB/TrEMBL
-
H3BTU8
- UniProtKB/Swiss-Prot
-
Q96A37
- Related
- ENSP00000457336, OTTHUMP00000250451, ENST00000567844, OTTHUMT00000423211
- Conserved Domains (1) summary
-
- pfam05605
Location:66 – 106
Blast Score: 85
- Di19; Drought induced 19 protein (Di19)
-
NM_001171816.1 → NP_001165287.1 RING finger protein 166 isoform 3
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) differs in the 5' UTR, lacks a portion of the 5' coding region, and uses a downstream start codon, compared to variant 1. The resulting isoform (3) is shorter at the N-terminus, compared to isoform 1.
- Source sequence(s)
-
AC138028, AI800509, AK057106
- Consensus CDS
-
CCDS54056.1
- UniProtKB/Swiss-Prot
-
Q96A37
- Related
- ENSP00000440454, OTTHUMP00000250450, ENST00000541206, OTTHUMT00000423210
- Conserved Domains (1) summary
-
- pfam05605
Location:38 – 78
Blast Score: 83
- Di19; Drought induced 19 protein (Di19)
-
NM_178841.3 → NP_849163.1 RING finger protein 166 isoform 1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) encodes the longest isoform (1).
- Source sequence(s)
-
AC138028, AI800509, AK057106, BC013948, DA376321
- Consensus CDS
-
CCDS10969.1
- UniProtKB/Swiss-Prot
-
Q96A37
- Related
- ENSP00000326095, OTTHUMP00000175194, ENST00000312838, OTTHUMT00000269544
- Conserved Domains (3) summary
-
- cd00162
Location:32 – 76
Blast Score: 124
- RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
- pfam05605
Location:147 – 187
Blast Score: 84
- Di19; Drought induced 19 protein (Di19)
- pfam13923
Location:30 – 73
Blast Score: 107
- zf-C3HC4_2; Zinc finger, C3HC4 type (RING finger)
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as RefSeqs
for chromosomes and scaffolds (contigs) from both reference and alternate assemblies.
Model RNAs and proteins are also reported here.
Reference GRCh37.p5 Primary Assembly
Genomic
-
NC_000016.9 Reference GRCh37.p5 Primary Assembly
- Range
- 88762903..88772829, complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate HuRef
Genomic
-
AC_000148.1 Alternate HuRef
- Range
- 74457276..74467225, complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)