These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in this
section to the one reported in Genomic regions, transcripts, and products above.
mRNA and Protein(s)
-
NM_152896.2 → NP_690856.1 E3 ubiquitin-protein ligase UHRF2
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the shorter transcript.
- Source sequence(s)
-
AB071698, AF274049, BG709183
- Consensus CDS
-
CCDS6469.1
- UniProtKB/Swiss-Prot
-
Q96PU4
- Related
- ENSP00000276893, OTTHUMP00000021047, ENST00000276893, OTTHUMT00000051665
- Conserved Domains (7) summary
-
- cd00162
Location:732 – 775
Blast Score: 103
- RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
- pfam12148
Location:177 – 261
Blast Score: 370
- DUF3590; Protein of unknown function (DUF3590)
- cd01797
Location:1 – 78
Blast Score: 417
- NIRF_N; amino-terminal ubiquitin-like domain of Np95 and NIRF
- pfam00240
Location:6 – 76
Blast Score: 160
- ubiquitin; Ubiquitin family
- pfam13923
Location:729 – 773
Blast Score: 101
- zf-C3HC4_2; Zinc finger, C3HC4 type (RING finger)
- cl02620
Location:445 – 614
Blast Score: 505
- YDG_SRA; YDG/SRA domain
- cl15348
Location:347 – 395
Blast Score: 151
- RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
RNA
-
NR_046386.1 RNA Sequence
- Description
- Transcript Variant: This variant (2) has an alternate internal exon in the coding region, compared to variant 1, which results in a frameshift and early stop codon. This variant is represented as non-coding because the use of the 5'-most supported translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AB071698, AF274049, BC028397
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as RefSeqs
for chromosomes and scaffolds (contigs) from both reference and alternate assemblies.
Model RNAs and proteins are also reported here.
Reference GRCh37.p5 Primary Assembly
Genomic
-
NC_000009.11 Reference GRCh37.p5 Primary Assembly
- Range
- 6413151..6507054
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate HuRef
Genomic
-
AC_000141.1 Alternate HuRef
- Range
- 6368448..6462031
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)