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Vsx1 visual system homeobox 1 [ Mus musculus (house mouse) ]

Gene ID: 114889, updated on 8-May-2016
Official Symbol
Vsx1provided by MGI
Official Full Name
visual system homeobox 1provided by MGI
Primary source
MGI:MGI:1890816
See related
Ensembl:ENSMUSG00000033080 Vega:OTTMUSG00000015757
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
CHX10-like
Orthologs
Location:
2 G3; 2 74.74 cM
Exon count:
5
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 2 NC_000068.7 (150680702..150689137, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (150506438..150514873, complement)

Chromosome 2 - NC_000068.7Genomic Context describing neighboring genes Neighboring gene adipocyte plasma membrane associated protein Neighboring gene acyl-CoA synthetase short-chain family member 1 Neighboring gene RIKEN cDNA E130215H24 gene Neighboring gene ectonucleoside triphosphate diphosphohydrolase 6 Neighboring gene predicted gene, 30141

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
chromatin binding IBA
Inferred from Biological aspect of Ancestor
more info
 
sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 
transcription regulatory region DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
 
Process Evidence Code Pubs
multicellular organism development IEA
Inferred from Electronic Annotation
more info
 
neuron development IMP
Inferred from Mutant Phenotype
more info
PubMed 
neuron maturation IGI
Inferred from Genetic Interaction
more info
PubMed 
regulation of transcription, DNA-templated IBA
Inferred from Biological aspect of Ancestor
more info
 
response to stimulus IEA
Inferred from Electronic Annotation
more info
 
retinal bipolar neuron differentiation IGI
Inferred from Genetic Interaction
more info
PubMed 
retinal bipolar neuron differentiation IMP
Inferred from Mutant Phenotype
more info
PubMed 
transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
visual perception IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
nucleus IDA
Inferred from Direct Assay
more info
PubMed 
Preferred Names
visual system homeobox 1
Names
homeodomain protein RINX
retinal inner nuclear layer homeobox protein
transcription factor VSX1
visual system homeobox 1 homolog

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_054068.2NP_473409.1  visual system homeobox 1

    See identical proteins and their annotated locations for NP_473409.1

    Status: PROVISIONAL

    Source sequence(s)
    BC057647
    Consensus CDS
    CCDS16860.1
    UniProtKB/Swiss-Prot
    Q91V10
    UniProtKB/TrEMBL
    A2AQX5
    Related
    ENSMUSP00000039088, OTTMUSP00000016771, ENSMUST00000046095, OTTMUST00000037425
    Conserved Domains (1) summary
    cd00086
    Location:172230
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000068.7 Reference GRCm38.p3 C57BL/6J

    Range
    150680702..150689137 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Mm_Celera

Genomic

  1. AC_000024.1 Alternate Mm_Celera

    Range
    151915696..151924136 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)