U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC11429687 indole-3-glycerol phosphate synthase, chloroplastic [ Medicago truncatula (barrel medic) ]

Gene ID: 11429687, updated on 7-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC11429687
Gene description
indole-3-glycerol phosphate synthase, chloroplastic
Locus tag
MtrunA17_Chr5g0438151
Gene type
protein coding
RefSeq status
MODEL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 5
Exon count:
10
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 5 NC_053046.1 (37460109..37465319, complement)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 5 NC_016411.2 (36261584..36266830, complement)

Chromosome 5 - NC_053046.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120580517 Neighboring gene glycine-rich protein DOT1 Neighboring gene acanthoscurrin-2 Neighboring gene protein transport protein Sec61 subunit gamma

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables indole-3-glycerol-phosphate synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphoribosylanthranilate isomerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tryptophan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
indole-3-glycerol phosphate synthase, chloroplastic
Names
putative indole-3-glycerol-phosphate synthase

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053046.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    37460109..37465319 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013598812.3 → XP_013454266.1  indole-3-glycerol phosphate synthase, chloroplastic isoform X2

    UniProtKB/TrEMBL
    A0A072UF41, B7FI09
    Conserved Domains (1) summary
    PLN02460
    Location:16 → 352
    PLN02460; indole-3-glycerol-phosphate synthase

  2. XM_003616716.4 → XP_003616764.1  indole-3-glycerol phosphate synthase, chloroplastic isoform X1

    See identical proteins and their annotated locations for XP_003616764.1

    UniProtKB/TrEMBL
    G7KH34, I3T5F3
    Conserved Domains (1) summary
    PLN02460
    Location:53 → 389
    PLN02460; indole-3-glycerol-phosphate synthase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases