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Snrnp40 small nuclear ribonucleoprotein U5 subunit 40 [ Marmota flaviventris (yellow-bellied marmot) ]

Gene ID: 114094404, updated on 15-Mar-2024

Summary

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Gene symbol
Snrnp40
Gene description
small nuclear ribonucleoprotein U5 subunit 40
See related
EnsemblRapid:ENSMFVG00000002755
Gene type
protein coding
RefSeq status
MODEL
Organism
Marmota flaviventris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Marmota
Orthologs
human mouse all
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Genomic context

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See Snrnp40 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
101 current GSC_YBM_2.0 (GCF_003676075.2) Unplaced Scaffold NW_023144676.1 (6828348..6861685)
100 previous assembly ASM367607v1 (GCF_003676075.1) Unplaced Scaffold NW_020963127.1 (14320547..14353884)

NW_023144676.1Genomic Context describing neighboring genes Neighboring gene fatty acid binding protein 3 Neighboring gene chromatin accessibility complex protein 1-like Neighboring gene zinc finger CCHC-type containing 17 Neighboring gene 60S ribosomal protein L17-like Neighboring gene small nucleolar RNA SNORA70 Neighboring gene uncharacterized LOC117794778 Neighboring gene sodium/potassium transporting ATPase interacting 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
U5 small nuclear ribonucleoprotein 40 kDa protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Marmota flaviventris Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GSC_YBM_2.0 Primary Assembly

Genomic

  1. NW_023144676.1 Reference GSC_YBM_2.0 Primary Assembly

    Range
    6828348..6861685
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027937556.1 → XP_027793357.1  U5 small nuclear ribonucleoprotein 40 kDa protein

    Related
    ENSMFVP00000004389.1, ENSMFVT00000004910.1
    Conserved Domains (2) summary
    cd00200
    Location:63 → 352
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:71 → 108
    7WD40; WD40 repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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