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Banf1 barrier to autointegration factor 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 114087, updated on 8-May-2016
Official Symbol
Banf1provided by RGD
Official Full Name
barrier to autointegration factor 1provided by RGD
Primary source
RGD:620662
See related
Ensembl:ENSRNOG00000020460
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus
Also known as
Baf; Bcrp1; L2bp1; L2bp1/Baf
Summary
involved in protection of retroviral DNA from autointegration [RGD, Feb 2006]
Orthologs
Location:
1q43
Exon count:
5
Annotation release Status Assembly Chr Location
105 current Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (220744195..220746224, complement)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 1 NC_005100.3 (227673526..227675555, complement)

Chromosome 1 - NC_005100.4Genomic Context describing neighboring genes Neighboring gene cation channel, sperm associated 1 Neighboring gene cystatin E/M Neighboring gene eukaryotic translation initiation factor 1A domain containing Neighboring gene uncharacterized LOC103691278

Markers

Homology

Clone Names

  • MGC105365

Gene Ontology Provided by RGD

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
DNA binding ISO
Inferred from Sequence Orthology
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
protein homodimerization activity IDA
Inferred from Direct Assay
more info
PubMed 
Process Evidence Code Pubs
DNA integration IEA
Inferred from Electronic Annotation
more info
 
DNA integration ISO
Inferred from Sequence Orthology
more info
 
biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
condensed chromosome IDA
Inferred from Direct Assay
more info
PubMed 
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
cytoplasm ISO
Inferred from Sequence Orthology
more info
 
extracellular exosome IEA
Inferred from Electronic Annotation
more info
 
extracellular exosome ISO
Inferred from Sequence Orthology
more info
 
nucleoplasm IEA
Inferred from Electronic Annotation
more info
 
nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
nucleus IDA
Inferred from Direct Assay
more info
PubMed 
nucleus ISO
Inferred from Sequence Orthology
more info
 
Preferred Names
barrier-to-autointegration factor
Names
Breakpoint cluster region protein, uterine leiomyoma, 1
Breakpoint cluster region protein, uterine leiomyoma, 1; barrier to autointegration factor
LAP2-binding protein 1
Lap2 binding protein 1
breakpoint cluster region protein 1

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_053631.3NP_446083.1  barrier-to-autointegration factor

    See identical proteins and their annotated locations for NP_446083.1

    Status: VALIDATED

    Source sequence(s)
    AC109096, BC084726, CB766065
    UniProtKB/Swiss-Prot
    Q9R1T1
    Related
    ENSRNOP00000027734, ENSRNOT00000027734
    Conserved Domains (1) summary
    smart01023
    Location:288
    BAF; Barrier to autointegration factor

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005100.4 Reference Rnor_6.0 Primary Assembly

    Range
    220744195..220746224 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006230631.1XP_006230693.1  

    See identical proteins and their annotated locations for XP_006230693.1

    UniProtKB/Swiss-Prot
    Q9R1T1
    Conserved Domains (1) summary
    smart01023
    Location:288
    BAF; Barrier to autointegration factor
  2. XM_006230632.2XP_006230694.1  

    See identical proteins and their annotated locations for XP_006230694.1

    UniProtKB/Swiss-Prot
    Q9R1T1
    Conserved Domains (1) summary
    smart01023
    Location:288
    BAF; Barrier to autointegration factor
  3. XM_006230630.2XP_006230692.1  

    See identical proteins and their annotated locations for XP_006230692.1

    UniProtKB/Swiss-Prot
    Q9R1T1
    Conserved Domains (1) summary
    smart01023
    Location:288
    BAF; Barrier to autointegration factor

Alternate Rn_Celera

Genomic

  1. AC_000069.1 Alternate Rn_Celera

    Range
    200207485..200209514 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)