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Acan aggrecan [ Marmota flaviventris (yellow-bellied marmot) ]

Gene ID: 114080187, updated on 15-Mar-2024

Summary

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Gene symbol
Acan
Gene description
aggrecan
See related
EnsemblRapid:ENSMFVG00000001829
Gene type
protein coding
RefSeq status
MODEL
Organism
Marmota flaviventris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Marmota
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
101 current GSC_YBM_2.0 (GCF_003676075.2) Unplaced Scaffold NW_023144638.1 (38253299..38288639)
100 previous assembly ASM367607v1 (GCF_003676075.1) Unplaced Scaffold NW_020963078.1 (38263859..38299199)

NW_023144638.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114078687 Neighboring gene small nucleolar RNA U13 Neighboring gene hyaluronan and proteoglycan link protein 3 Neighboring gene milk fat globule EGF and factor V/VIII domain containing

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hyaluronic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: aggrecan core protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Marmota flaviventris Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GSC_YBM_2.0 Primary Assembly

Genomic

  1. NW_023144638.1 Reference GSC_YBM_2.0 Primary Assembly

    Range
    38253299..38288639
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027921774.1 → XP_027777575.1  LOW QUALITY PROTEIN: aggrecan core protein

    Related
    ENSMFVP00000002885.1, ENSMFVT00000003226.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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