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BECN1 beclin 1 [ Pipra filicauda (Wire-tailed manakin) ]

Gene ID: 114000952, updated on 15-Mar-2024

Summary

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Gene symbol
BECN1
Gene description
beclin 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Pipra filicauda
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Pipridae; Pipra
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
101 current ASM394559v2 (GCF_003945595.2) Unplaced Scaffold NW_024104302.1 (1722382..1726446)
100 previous assembly ASM394559v1 (GCF_003945595.1) Unplaced Scaffold NW_020894147.1 (1559137..1563201)

NW_024104302.1Genomic Context describing neighboring genes Neighboring gene membrane primary amine oxidase-like Neighboring gene proteasome activator subunit 3 Neighboring gene cyclin N-terminal domain containing 1 Neighboring gene cytochrome c oxidase assembly factor 3 homolog, mitochondrial Neighboring gene WNK lysine deficient protein kinase 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in autophagosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in autophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cellular response to nitrogen starvation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in late endosome to vacuole transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in phagophore assembly site IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of phosphatidylinositol 3-kinase complex, class III, type I IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of phosphatidylinositol 3-kinase complex, class III, type II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beclin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pipra filicauda Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM394559v2

Genomic

  1. NW_024104302.1 Reference ASM394559v2

    Range
    1722382..1726446
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027745786.1 → XP_027601587.1  beclin-1 isoform X2

    UniProtKB/TrEMBL
    A0A6J2IP38
    Conserved Domains (3) summary
    pfam15285
    Location:105 → 127
    BH3; Beclin-1 BH3 domain, Bcl-2-interacting
    pfam04111
    Location:265 → 443
    APG6; Autophagy protein Apg6
    pfam17675
    Location:133 → 259
    APG6_N; Apg6 coiled-coil region

  2. XM_027745781.2 → XP_027601582.1  beclin-1 isoform X1

    UniProtKB/TrEMBL
    A0A6J2IP33
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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