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PCGF2 polycomb group ring finger 2 [ Zalophus californianus (California sea lion) ]

Gene ID: 113939514, updated on 15-Mar-2024

Summary

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Gene symbol
PCGF2
Gene description
polycomb group ring finger 2
See related
EnsemblRapid:ENSZCAG00025014320
Gene type
protein coding
RefSeq status
MODEL
Organism
Zalophus californianus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Otariidae; Zalophus
Orthologs
human mouse all
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Genomic context

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See PCGF2 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
15
Annotation release Status Assembly Chr Location
101 current mZalCal1.pri.v2 (GCF_009762305.2) 16 NC_045610.1 (38384182..38397154, complement)
100 previous assembly zalCal2.2 (GCF_900631625.1) Unplaced Scaffold NW_020875730.1 (22706797..22719767)

Chromosome 16 - NC_045610.1Genomic Context describing neighboring genes Neighboring gene MLLT6, PHD finger containing Neighboring gene CDGSH iron sulfur domain 3 Neighboring gene transfer RNA asparagine (anticodon GUU) Neighboring gene proteasome 20S subunit beta 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables promoter-specific chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of PRC1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polycomb group RING finger protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Zalophus californianus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mZalCal1.pri.v2 Primary Assembly

Genomic

  1. NC_045610.1 Reference mZalCal1.pri.v2 Primary Assembly

    Range
    38384182..38397154 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027625731.2 → XP_027481532.2  polycomb group RING finger protein 2 isoform X3

    UniProtKB/TrEMBL
    A0A6J2FNC5, A0A6J2FND6
    Conserved Domains (3) summary
    PHA03269
    Location:222 → 299
    PHA03269; envelope glycoprotein C; Provisional
    cd16736
    Location:12 → 65
    RING-HC_PCGF4; RING finger found in polycomb group RING finger protein 4 (PCGF4) and similar proteins
    cd17164
    Location:130 → 228
    RAWUL_PCGF2; RING finger- and WD40-associated ubiquitin-like (RAWUL) domain found in polycomb group RING finger protein 2 (PCGF2)

  2. XM_035724579.1 → XP_035580472.1  polycomb group RING finger protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A6P9FHN8
    Related
    ENSZCAP00025022520.1, ENSZCAT00025025537.1
    Conserved Domains (2) summary
    cd16736
    Location:12 → 65
    RING-HC_PCGF4; RING finger found in polycomb group RING finger protein 4 (PCGF4) and similar proteins
    cd17164
    Location:130 → 228
    RAWUL_PCGF2; RING finger- and WD40-associated ubiquitin-like (RAWUL) domain found in polycomb group RING finger protein 2 (PCGF2)

  3. XM_027625734.1 → XP_027481535.1  polycomb group RING finger protein 2 isoform X3

    UniProtKB/TrEMBL
    A0A6J2FNC5, A0A6J2FND6
    Conserved Domains (3) summary
    PHA03269
    Location:222 → 299
    PHA03269; envelope glycoprotein C; Provisional
    cd16736
    Location:12 → 65
    RING-HC_PCGF4; RING finger found in polycomb group RING finger protein 4 (PCGF4) and similar proteins
    cd17164
    Location:130 → 228
    RAWUL_PCGF2; RING finger- and WD40-associated ubiquitin-like (RAWUL) domain found in polycomb group RING finger protein 2 (PCGF2)

  4. XM_027625735.2 → XP_027481536.1  polycomb group RING finger protein 2 isoform X3

    UniProtKB/TrEMBL
    A0A6J2FNC5, A0A6J2FND6
    Conserved Domains (3) summary
    PHA03269
    Location:222 → 299
    PHA03269; envelope glycoprotein C; Provisional
    cd16736
    Location:12 → 65
    RING-HC_PCGF4; RING finger found in polycomb group RING finger protein 4 (PCGF4) and similar proteins
    cd17164
    Location:130 → 228
    RAWUL_PCGF2; RING finger- and WD40-associated ubiquitin-like (RAWUL) domain found in polycomb group RING finger protein 2 (PCGF2)

  5. XM_027625733.2 → XP_027481534.1  polycomb group RING finger protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A6J2FNM9
Nucleotide Protein
Heading Accession and Version

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