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SVIP small VCP interacting protein [ Zalophus californianus (California sea lion) ]

Gene ID: 113914088, updated on 15-Mar-2024

Summary

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Gene symbol
SVIP
Gene description
small VCP interacting protein
See related
EnsemblRapid:ENSZCAG00025014302
Gene type
protein coding
RefSeq status
MODEL
Organism
Zalophus californianus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Otariidae; Zalophus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 11
Exon count:
7
Annotation release Status Assembly Chr Location
101 current mZalCal1.pri.v2 (GCF_009762305.2) 11 NC_045605.1 (76526010..76568460, complement)
100 previous assembly zalCal2.2 (GCF_900631625.1) Unplaced Scaffold NW_020879070.1 (36517334..36559790)

Chromosome 11 - NC_045605.1Genomic Context describing neighboring genes Neighboring gene U2 spliceosomal RNA Neighboring gene FA complementation group F Neighboring gene growth arrest specific 2 Neighboring gene coiled-coil domain containing 179 Neighboring gene RNA transcription, translation and transport factor protein-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in negative regulation of VCP-NPL4-UFD1 AAA ATPase complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of retrograde protein transport, ER to cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of autophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
small VCP/p97-interacting protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Zalophus californianus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mZalCal1.pri.v2 Primary Assembly

Genomic

  1. NC_045605.1 Reference mZalCal1.pri.v2 Primary Assembly

    Range
    76526010..76568460 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027578913.2 → XP_027434714.1  small VCP/p97-interacting protein isoform X3

    UniProtKB/TrEMBL
    A0A6J2BS37
    Related
    ENSZCAP00025022479.1, ENSZCAT00025025490.1

  2. XM_027578910.1 → XP_027434711.1  small VCP/p97-interacting protein isoform X1

    UniProtKB/TrEMBL
    A0A6J2BUK0

  3. XM_027578912.2 → XP_027434713.1  small VCP/p97-interacting protein isoform X2

    UniProtKB/TrEMBL
    A0A6J2BY60
    Related
    ENSZCAP00025022504.1, ENSZCAT00025025517.1

RNA

  1. XR_003517376.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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