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SPTAN1 spectrin alpha, non-erythrocytic 1 [ Bos indicus x Bos taurus (hybrid cattle) ]

Gene ID: 113901705, updated on 15-Mar-2024

Summary

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Gene symbol
SPTAN1
Gene description
spectrin alpha, non-erythrocytic 1
See related
Ensembl:ENSBIXG00005006741
Gene type
protein coding
RefSeq status
MODEL
Organism
Bos indicus x Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 11
Exon count:
59
Annotation release Status Assembly Chr Location
100 current UOA_Brahman_1 (GCF_003369695.1) 11 NC_040086.1 (98240094..98298529)

Chromosome 11 - NC_040086.1Genomic Context describing neighboring genes Neighboring gene outer dense fiber of sperm tails 2 Neighboring gene GLE1 RNA export mediator Neighboring gene dynein 2 intermediate chain 2 Neighboring gene SET nuclear proto-oncogene Neighboring gene protein kinase N3 Neighboring gene zinc finger DHHC-type palmitoyltransferase 12

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_040086.1 Chromosome 11 Reference UOA_Brahman_1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cell projection IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cortical actin cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
spectrin alpha chain, non-erythrocytic 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bos indicus x Bos taurus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UOA_Brahman_1

Genomic

  1. NC_040086.1 Reference UOA_Brahman_1

    Range
    98240094..98298529
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027556473.1 → XP_027412274.1  spectrin alpha chain, non-erythrocytic 1 isoform X16

    UniProtKB/TrEMBL
    A0A4W2EAW7

  2. XM_027556468.1 → XP_027412269.1  spectrin alpha chain, non-erythrocytic 1 isoform X12

    UniProtKB/TrEMBL
    A0A4W2EAW7, A0A4W2FYN5
    Related
    ENSBIXP00005009639.1, ENSBIXT00005017706.1

  3. XM_027556459.1 → XP_027412260.1  spectrin alpha chain, non-erythrocytic 1 isoform X3

    UniProtKB/TrEMBL
    A0A4W2CR18, A0A4W2FVW0
    Related
    ENSBIXP00005009573.1, ENSBIXT00005017605.1

  4. XM_027556466.1 → XP_027412267.1  spectrin alpha chain, non-erythrocytic 1 isoform X10

    UniProtKB/TrEMBL
    A0A4W2ELF9, A0A4W2HR21
    Related
    ENSBIXP00005033615.1, ENSBIXT00005044746.1

  5. XM_027556465.1 → XP_027412266.1  spectrin alpha chain, non-erythrocytic 1 isoform X9

    UniProtKB/TrEMBL
    A0A4W2CR18, A0A4W2HQE0
    Related
    ENSBIXP00005033598.1, ENSBIXT00005044728.1

  6. XM_027556467.1 → XP_027412268.1  spectrin alpha chain, non-erythrocytic 1 isoform X11

    UniProtKB/TrEMBL
    A0A4W2CR18

  7. XM_027556472.1 → XP_027412273.1  spectrin alpha chain, non-erythrocytic 1 isoform X15

    UniProtKB/TrEMBL
    A0A4W2EAW7

  8. XM_027556458.1 → XP_027412259.1  spectrin alpha chain, non-erythrocytic 1 isoform X2

    UniProtKB/TrEMBL
    A0A4W2CR18
    Related
    ENSBIXP00005009448.1, ENSBIXT00005044688.1

  9. XM_027556460.1 → XP_027412261.1  spectrin alpha chain, non-erythrocytic 1 isoform X4

    UniProtKB/TrEMBL
    A0A4W2CR18

  10. XM_027556457.1 → XP_027412258.1  spectrin alpha chain, non-erythrocytic 1 isoform X1

    UniProtKB/TrEMBL
    A0A4W2CR18

  11. XM_027556464.1 → XP_027412265.1  spectrin alpha chain, non-erythrocytic 1 isoform X8

    UniProtKB/TrEMBL
    A0A4W2ELF9

  12. XM_027556461.1 → XP_027412262.1  spectrin alpha chain, non-erythrocytic 1 isoform X5

    UniProtKB/TrEMBL
    A0A4W2CR18

  13. XM_027556462.1 → XP_027412263.1  spectrin alpha chain, non-erythrocytic 1 isoform X6

    UniProtKB/TrEMBL
    A0A4W2ELF9

  14. XM_027556463.1 → XP_027412264.1  spectrin alpha chain, non-erythrocytic 1 isoform X7

    UniProtKB/TrEMBL
    A0A4W2EAW7

  15. XM_027556469.1 → XP_027412270.1  spectrin alpha chain, non-erythrocytic 1 isoform X13

    UniProtKB/TrEMBL
    A0A4W2ELF9

  16. XM_027556471.1 → XP_027412272.1  spectrin alpha chain, non-erythrocytic 1 isoform X14

    UniProtKB/TrEMBL
    A0A4W2EAW7
Nucleotide Protein
Heading Accession and Version

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