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LOC113647866 SRY-box transcription factor 13 [ Tachysurus fulvidraco (yellow catfish) ]

Gene ID: 113647866, updated on 10-Apr-2024

Summary

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Gene symbol
LOC113647866
Gene description
SRY-box transcription factor 13
See related
EnsemblRapid:ENSTFUG00005005497
Gene type
protein coding
RefSeq status
MODEL
Organism
Tachysurus fulvidraco
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Bagridae; Tachysurus
Also known as
sox13
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Genomic context

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Location:
chromosome: 2
Exon count:
18
Annotation release Status Assembly Chr Location
101 current HZAU_PFXX_2.0 (GCF_022655615.1) 2 NC_062519.1 (3397848..3431096, complement)
100 previous assembly ASM372403v1 (GCF_003724035.1) Unplaced Scaffold NW_020847828.1 (380826..414171, complement)

Chromosome 2 - NC_062519.1Genomic Context describing neighboring genes Neighboring gene serine/threonine-protein kinase pim-1-like Neighboring gene ethanolamine kinase 2 Neighboring gene small nuclear ribonucleoprotein polypeptide E Neighboring gene YOD1 deubiquitinase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell fate commitment IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor SOX-13
Names
SRY-box 13

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Tachysurus fulvidraco Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HZAU_PFXX_2.0

Genomic

  1. NC_062519.1 Reference HZAU_PFXX_2.0

    Range
    3397848..3431096 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027154848.2 → XP_027010649.1  transcription factor SOX-13 isoform X6

    Related
    ENSTFUP00005011640.1, ENSTFUT00005014232.1

  2. XM_027154850.2 → XP_027010651.1  transcription factor SOX-13 isoform X6

    Related
    ENSTFUP00005011634.1, ENSTFUT00005014226.1

  3. XM_047808552.1 → XP_047664508.1  transcription factor SOX-13 isoform X4

  4. XM_027154845.2 → XP_027010646.1  transcription factor SOX-13 isoform X2

  5. XM_027154846.2 → XP_027010647.1  transcription factor SOX-13 isoform X3

    Related
    ENSTFUP00005011625.1, ENSTFUT00005014217.1

  6. XM_027154844.2 → XP_027010645.1  transcription factor SOX-13 isoform X1

  7. XM_027154847.2 → XP_027010648.1  transcription factor SOX-13 isoform X5

    Related
    ENSTFUP00005011618.1, ENSTFUT00005014210.1
Nucleotide Protein
Heading Accession and Version

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