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cbx5 chromobox homolog 5 (HP1 alpha homolog, Drosophila) [ Tachysurus fulvidraco (yellow catfish) ]

Gene ID: 113641885, updated on 15-Mar-2024

Summary

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Gene symbol
cbx5
Gene description
chromobox homolog 5 (HP1 alpha homolog, Drosophila)
Gene type
protein coding
RefSeq status
MODEL
Organism
Tachysurus fulvidraco
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Bagridae; Tachysurus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 23
Exon count:
7
Annotation release Status Assembly Chr Location
101 current HZAU_PFXX_2.0 (GCF_022655615.1) 23 NC_062540.1 (3932759..3940210)
100 previous assembly ASM372403v1 (GCF_003724035.1) Unplaced Scaffold NW_020848400.1 (1366705..1374151)

Chromosome 23 - NC_062540.1Genomic Context describing neighboring genes Neighboring gene nuclear factor, erythroid 2 Neighboring gene heterogeneous nuclear ribonucleoprotein A1b Neighboring gene homeobox C1a Neighboring gene homeobox protein Hox-C3a-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables methylated histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of pericentric heterochromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chromobox protein homolog 5
Names
chromobox 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Tachysurus fulvidraco Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HZAU_PFXX_2.0

Genomic

  1. NC_062540.1 Reference HZAU_PFXX_2.0

    Range
    3932759..3940210
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027144988.2 → XP_027000789.1  chromobox protein homolog 5

  2. XM_027144989.2 → XP_027000790.1  chromobox protein homolog 5

Nucleotide Protein
Heading Accession and Version

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