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ZBTB18 zinc finger and BTB domain containing 18 [ Lagenorhynchus obliquidens (Pacific white-sided dolphin) ]

Gene ID: 113628614, updated on 15-Mar-2024

Summary

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Gene symbol
ZBTB18
Gene description
zinc finger and BTB domain containing 18
See related
EnsemblRapid:ENSLOBG00000006211
Gene type
protein coding
RefSeq status
MODEL
Organism
Lagenorhynchus obliquidens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Lagenorhynchus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
100 current ASM367639v1 (GCF_003676395.1) Unplaced Scaffold NW_020837968.1 (22824847..22833547, complement)

NW_020837968.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC113628612 Neighboring gene uncharacterized LOC113628613 Neighboring gene basic proline-rich protein-like Neighboring gene uncharacterized LOC113628621 Neighboring gene AKT serine/threonine kinase 3 Neighboring gene zinc finger CCCH domain-containing protein 15 pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020837968 Unplaced Scaffold Reference ASM367639v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger and BTB domain-containing protein 18

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lagenorhynchus obliquidens Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM367639v1 Primary Assembly

Genomic

  1. NW_020837968.1 Reference ASM367639v1 Primary Assembly

    Range
    22824847..22833547 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027122426.1 → XP_026978227.1  zinc finger and BTB domain-containing protein 18 isoform X3

    Conserved Domains (4) summary
    COG5048
    Location:294 → 481
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:412 → 432
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18324
    Location:1 → 147
    BTB_POZ_ZBTB18_RP58; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 18 (ZBTB18)
    pfam13465
    Location:425 → 447
    zf-H2C2_2; Zinc-finger double domain

  2. XM_027122424.1 → XP_026978225.1  zinc finger and BTB domain-containing protein 18 isoform X3

    Conserved Domains (4) summary
    COG5048
    Location:294 → 481
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:412 → 432
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18324
    Location:1 → 147
    BTB_POZ_ZBTB18_RP58; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 18 (ZBTB18)
    pfam13465
    Location:425 → 447
    zf-H2C2_2; Zinc-finger double domain

  3. XM_027122420.1 → XP_026978221.1  zinc finger and BTB domain-containing protein 18 isoform X2

    Related
    ENSLOBP00000008288.1, ENSLOBT00000009153.1
    Conserved Domains (4) summary
    COG5048
    Location:303 → 490
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:421 → 441
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18324
    Location:10 → 156
    BTB_POZ_ZBTB18_RP58; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 18 (ZBTB18)
    pfam13465
    Location:434 → 456
    zf-H2C2_2; Zinc-finger double domain

  4. XM_027122417.1 → XP_026978218.1  zinc finger and BTB domain-containing protein 18 isoform X1

    Conserved Domains (4) summary
    COG5048
    Location:307 → 494
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:425 → 445
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18324
    Location:14 → 160
    BTB_POZ_ZBTB18_RP58; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 18 (ZBTB18)
    pfam13465
    Location:438 → 460
    zf-H2C2_2; Zinc-finger double domain

  5. XM_027122419.1 → XP_026978220.1  zinc finger and BTB domain-containing protein 18 isoform X2

    Conserved Domains (4) summary
    COG5048
    Location:303 → 490
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:421 → 441
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18324
    Location:10 → 156
    BTB_POZ_ZBTB18_RP58; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 18 (ZBTB18)
    pfam13465
    Location:434 → 456
    zf-H2C2_2; Zinc-finger double domain

  6. XM_027122418.1 → XP_026978219.1  zinc finger and BTB domain-containing protein 18 isoform X2

    Conserved Domains (4) summary
    COG5048
    Location:303 → 490
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:421 → 441
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18324
    Location:10 → 156
    BTB_POZ_ZBTB18_RP58; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 18 (ZBTB18)
    pfam13465
    Location:434 → 456
    zf-H2C2_2; Zinc-finger double domain

  7. XM_027122425.1 → XP_026978226.1  zinc finger and BTB domain-containing protein 18 isoform X3

    Conserved Domains (4) summary
    COG5048
    Location:294 → 481
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:412 → 432
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18324
    Location:1 → 147
    BTB_POZ_ZBTB18_RP58; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 18 (ZBTB18)
    pfam13465
    Location:425 → 447
    zf-H2C2_2; Zinc-finger double domain

  8. XM_027122416.1 → XP_026978217.1  zinc finger and BTB domain-containing protein 18 isoform X1

    Conserved Domains (4) summary
    COG5048
    Location:307 → 494
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:425 → 445
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18324
    Location:14 → 160
    BTB_POZ_ZBTB18_RP58; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 18 (ZBTB18)
    pfam13465
    Location:438 → 460
    zf-H2C2_2; Zinc-finger double domain

  9. XM_027122423.1 → XP_026978224.1  zinc finger and BTB domain-containing protein 18 isoform X3

    Conserved Domains (4) summary
    COG5048
    Location:294 → 481
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:412 → 432
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18324
    Location:1 → 147
    BTB_POZ_ZBTB18_RP58; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 18 (ZBTB18)
    pfam13465
    Location:425 → 447
    zf-H2C2_2; Zinc-finger double domain

  10. XM_027122422.1 → XP_026978223.1  zinc finger and BTB domain-containing protein 18 isoform X3

    Conserved Domains (4) summary
    COG5048
    Location:294 → 481
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:412 → 432
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18324
    Location:1 → 147
    BTB_POZ_ZBTB18_RP58; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 18 (ZBTB18)
    pfam13465
    Location:425 → 447
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
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