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smg7 SMG7 nonsense mediated mRNA decay factor [ Electrophorus electricus (electric eel) ]

Gene ID: 113578231, updated on 15-Mar-2024

Summary

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Gene symbol
smg7
Gene description
SMG7 nonsense mediated mRNA decay factor
See related
EnsemblRapid:ENSEEEG00000004370
Gene type
protein coding
RefSeq status
MODEL
Organism
Electrophorus electricus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Gymnotiformes; Gymnotoidei; Gymnotidae; Electrophorus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 18
Exon count:
23
Annotation release Status Assembly Chr Location
101 current fEleEle1.pri (GCF_013358815.1) 18 NC_049552.1 (15127081..15142906, complement)
100 previous assembly Ee_SOAP_WITH_SSPACE (GCF_003665695.1) Unplaced Scaffold NW_020826108.1 (14853..29591, complement)

Chromosome 18 - NC_049552.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC113567803 Neighboring gene uncharacterized LOC118242936 Neighboring gene nicotinamide nucleotide adenylyltransferase 2 Neighboring gene laminin, gamma 2 Neighboring gene laminin, gamma 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables telomerase RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables telomeric DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of telomerase holoenzyme complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein SMG7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Electrophorus electricus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fEleEle1.pri

Genomic

  1. NC_049552.1 Reference fEleEle1.pri

    Range
    15127081..15142906 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027011369.2 → XP_026867170.2  protein SMG7 isoform X2

    UniProtKB/TrEMBL
    A0A4W4EDL0
    Related
    ENSEEEP00000009049.2, ENSEEET00000009165.2
    Conserved Domains (3) summary
    sd00006
    Location:153 → 179
    TPR; TPR repeat [structural motif]
    pfam10373
    Location:170 → 423
    EST1_DNA_bind; Est1 DNA/RNA binding domain
    pfam10374
    Location:54 → 166
    EST1; Telomerase activating protein Est1

  2. XM_027011368.2 → XP_026867169.2  protein SMG7 isoform X1

    UniProtKB/TrEMBL
    A0A4W4EBM3
    Related
    ENSEEEP00000009048.2, ENSEEET00000009164.2
    Conserved Domains (3) summary
    sd00006
    Location:153 → 179
    TPR; TPR repeat [structural motif]
    pfam10373
    Location:170 → 423
    EST1_DNA_bind; Est1 DNA/RNA binding domain
    pfam10374
    Location:54 → 166
    EST1; Telomerase activating protein Est1
Nucleotide Protein
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