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ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component [ Electrophorus electricus (electric eel) ]

Gene ID: 113578161, updated on 15-Mar-2024

Summary

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Gene symbol
ctr9
Gene description
CTR9 homolog, Paf1/RNA polymerase II complex component
See related
EnsemblRapid:ENSEEEG00000014989
Gene type
protein coding
RefSeq status
MODEL
Organism
Electrophorus electricus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Gymnotiformes; Gymnotoidei; Gymnotidae; Electrophorus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 1
Exon count:
23
Annotation release Status Assembly Chr Location
101 current fEleEle1.pri (GCF_013358815.1) 1 NC_049535.1 (2554118..2561139)
100 previous assembly Ee_SOAP_WITH_SSPACE (GCF_003665695.1) Unplaced Scaffold NW_020825949.1 (424801..431756)

Chromosome 1 - NC_049535.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC113578251 Neighboring gene uncharacterized LOC118242340 Neighboring gene eukaryotic translation initiation factor 4, gamma 2a Neighboring gene UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 18b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II complex binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Cdc73/Paf1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RNA polymerase-associated protein CTR9 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Electrophorus electricus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fEleEle1.pri

Genomic

  1. NC_049535.1 Reference fEleEle1.pri

    Range
    2554118..2561139
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027011248.2 → XP_026867049.1  RNA polymerase-associated protein CTR9 homolog

    UniProtKB/TrEMBL
    A0A4W4G3T1
    Related
    ENSEEEP00000031305.1, ENSEEET00000031679.2
    Conserved Domains (4) summary
    sd00006
    Location:501 → 525
    TPR; TPR repeat [structural motif]
    pfam07946
    Location:829 → 876
    DUF1682; Protein of unknown function (DUF1682)
    pfam14797
    Location:1033 → 1148
    SEEEED; Serine-rich region of AP3B1, clathrin-adaptor complex
    cl26002
    Location:139 → 761
    TPR_11; TPR repeat
Nucleotide Protein
Heading Accession and Version

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