U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

sema3e sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E [ Electrophorus electricus (electric eel) ]

Gene ID: 113577189, updated on 15-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
sema3e
Gene description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E
Gene type
protein coding
RefSeq status
MODEL
Organism
Electrophorus electricus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Gymnotiformes; Gymnotoidei; Gymnotidae; Electrophorus
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 4
Exon count:
17
Annotation release Status Assembly Chr Location
101 current fEleEle1.pri (GCF_013358815.1) 4 NC_049538.1 (22402759..22434485)
100 previous assembly Ee_SOAP_WITH_SSPACE (GCF_003665695.1) Unplaced Scaffold NW_020826079.1 (441680..473865, complement)

Chromosome 4 - NC_049538.1Genomic Context describing neighboring genes Neighboring gene sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D Neighboring gene uncharacterized LOC113577190 Neighboring gene sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Ab Neighboring gene protein bassoon-like Neighboring gene piccolo presynaptic cytomatrix protein b Neighboring gene voltage-dependent calcium channel subunit alpha-2/delta-1

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chemorepellent activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables semaphorin receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative chemotaxis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of axon extension involved in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neural crest cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in semaphorin-plexin signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
semaphorin-3E
Names
semaphorin 3E

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Electrophorus electricus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fEleEle1.pri

Genomic

  1. NC_049538.1 Reference fEleEle1.pri

    Range
    22402759..22434485
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027009692.2 → XP_026865493.2  semaphorin-3E

    UniProtKB/TrEMBL
    A0A4W4FB51
    Conserved Domains (4) summary
    smart00423
    Location:516 → 564
    PSI; domain found in Plexins, Semaphorins and Integrins
    cd00096
    Location:580 → 586
    Ig; Ig strand A [structural motif]
    cl11960
    Location:580 → 669
    Ig; Immunoglobulin domain
    cl15693
    Location:48 → 517
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.