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tnfrsf11a tumor necrosis factor receptor superfamily, member 11a, NFKB activator [ Pangasianodon hypophthalmus (striped catfish) ]

Gene ID: 113541325, updated on 15-Mar-2024

Summary

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Gene symbol
tnfrsf11a
Gene description
tumor necrosis factor receptor superfamily, member 11a, NFKB activator
Locus tag
PHYPO_G00128880
See related
EnsemblRapid:ENSPHYG00025011955
Gene type
protein coding
RefSeq status
MODEL
Organism
Pangasianodon hypophthalmus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Pangasiidae; Pangasianodon
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: 22
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_02 current fPanHyp1.pri (GCF_027358585.1) 22 NC_069731.1 (16369806..16385642, complement)

Chromosome 22 - NC_069731.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC117595797 Neighboring gene ferroxidase HEPHL1 Neighboring gene histone-lysine N-methyltransferase PRDM9 Neighboring gene RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing Neighboring gene centrosome and spindle pole-associated protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_069731.1 Chromosome 22 Reference fPanHyp1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cytokine binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tumor necrosis factor receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lymph node development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in multinuclear osteoclast differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ossification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of NF-kappaB transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of bone resorption IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to interleukin-1 IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tumor necrosis factor receptor superfamily member 11A; tumor necrosis factor receptor superfamily member 5
Names
TNF receptor superfamily member 11a

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027358585.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPanHyp1.pri

Genomic

  1. NC_069731.1 Reference fPanHyp1.pri

    Range
    16369806..16385642 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026938238.3 → XP_026794039.1  tumor necrosis factor receptor superfamily member 11A isoform X1

    UniProtKB/TrEMBL
    A0A5N5KSB9
    Related
    ENSPHYP00025027634.1, ENSPHYT00025029704.1
    Conserved Domains (2) summary
    cd00185
    Location:70 → 111
    TNFRSF; CRD2 [structural motif]
    cl22855
    Location:30 → 151
    TNFRSF; Tumor necrosis factor receptor superfamily (TNFRSF)

  2. XM_026938239.3 → XP_026794040.1  tumor necrosis factor receptor superfamily member 5 isoform X2

    Conserved Domains (2) summary
    cd00185
    Location:70 → 111
    TNFRSF; CRD2 [structural motif]
    cl22855
    Location:30 → 151
    TNFRSF; Tumor necrosis factor receptor superfamily (TNFRSF)
Nucleotide Protein
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