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supt5h SPT5 homolog, DSIF elongation factor subunit [ Pangasianodon hypophthalmus (striped catfish) ]

Gene ID: 113532643, updated on 15-Mar-2024

Summary

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Gene symbol
supt5h
Gene description
SPT5 homolog, DSIF elongation factor subunit
Locus tag
PHYPO_G00052390
See related
EnsemblRapid:ENSPHYG00025005989
Gene type
protein coding
RefSeq status
MODEL
Organism
Pangasianodon hypophthalmus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Pangasiidae; Pangasianodon
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 14
Exon count:
30
Annotation release Status Assembly Chr Location
RS_2023_02 current fPanHyp1.pri (GCF_027358585.1) 14 NC_069723.1 (10304079..10326047, complement)

Chromosome 14 - NC_069723.1Genomic Context describing neighboring genes Neighboring gene calcineurin-like EF-hand protein 2 Neighboring gene cytochrome c oxidase subunit 7A2, mitochondrial Neighboring gene ribonuclease T2, like Neighboring gene interleukin 15, like Neighboring gene pleckstrin homology domain containing, family G (with RhoGef domain) member 2 Neighboring gene uncharacterized LOC113532676

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_069723.1 Chromosome 14 Reference fPanHyp1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription elongation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription elongation by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription elongation-coupled chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of DSIF complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription elongation factor SPT5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027358585.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPanHyp1.pri

Genomic

  1. NC_069723.1 Reference fPanHyp1.pri

    Range
    10304079..10326047 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_053239876.1 → XP_053095851.1  transcription elongation factor SPT5 isoform X3

    Related
    ENSPHYP00025013265.1, ENSPHYT00025014567.1

  2. XM_026924111.3 → XP_026779912.1  transcription elongation factor SPT5 isoform X2

    Related
    ENSPHYP00025013278.1, ENSPHYT00025014580.1
    Conserved Domains (5) summary
    cd09888
    Location:180 → 267
    NGN_Euk; Eukaryotic N-Utilization Substance G (NusG) N-terminal (NGN) domain, including plant KTF1 (KOW domain-containing Transcription Factor 1)
    cd06081
    Location:278 → 315
    KOW_Spt5_1; KOW domain of Spt5, repeat 1
    cd06086
    Location:1026 → 1082
    KOW_Spt5_6; KOW domain of Spt5, repeat 6
    pfam11942
    Location:95 → 173
    Spt5_N; Spt5 transcription elongation factor, acidic N-terminal
    cl26303
    Location:336 → 963
    CTD; Spt5 C-terminal nonapeptide repeat binding Spt4

  3. XM_026924110.3 → XP_026779911.1  transcription elongation factor SPT5 isoform X1

    UniProtKB/TrEMBL
    A0A5N5M7J4
    Related
    ENSPHYP00025013270.1, ENSPHYT00025014572.1
    Conserved Domains (5) summary
    cd09888
    Location:181 → 268
    NGN_Euk; Eukaryotic N-Utilization Substance G (NusG) N-terminal (NGN) domain, including plant KTF1 (KOW domain-containing Transcription Factor 1)
    COG5164
    Location:337 → 964
    SPT5; Transcription elongation factor [Transcription]
    cd06081
    Location:279 → 316
    KOW_Spt5_1; KOW domain of Spt5, repeat 1
    cd06086
    Location:1027 → 1083
    KOW_Spt5_6; KOW domain of Spt5, repeat 6
    pfam11942
    Location:97 → 174
    Spt5_N; Spt5 transcription elongation factor, acidic N-terminal
Nucleotide Protein
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