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hmga2 high mobility group AT-hook 2 [ Pangasianodon hypophthalmus (striped catfish) ]

Gene ID: 113531725, updated on 15-Mar-2024

Summary

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Gene symbol
hmga2
Gene description
high mobility group AT-hook 2
Locus tag
PHYPO_G00090180
Gene type
protein coding
RefSeq status
MODEL
Organism
Pangasianodon hypophthalmus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Pangasiidae; Pangasianodon
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 18
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_02 current fPanHyp1.pri (GCF_027358585.1) 18 NC_069727.1 (18251873..18281694)

Chromosome 18 - NC_069727.1Genomic Context describing neighboring genes Neighboring gene LEM domain containing 3 Neighboring gene methionine sulfoxide reductase B3 Neighboring gene interleukin-1 receptor-associated kinase 3 Neighboring gene helicase (DNA) B

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_069727.1 Chromosome 18 Reference fPanHyp1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coregulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
high mobility group protein HMGI-C

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027358585.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPanHyp1.pri

Genomic

  1. NC_069727.1 Reference fPanHyp1.pri

    Range
    18251873..18281694
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026922594.3 → XP_026778395.1  high mobility group protein HMGI-C

    UniProtKB/TrEMBL
    A0A5N5LHP3
    Conserved Domains (1) summary
    PRK12678
    Location:3 → 82
    PRK12678; transcription termination factor Rho; Provisional
Nucleotide Protein
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