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nhej1 nonhomologous end-joining factor 1 [ Pangasianodon hypophthalmus (striped catfish) ]

Gene ID: 113529471, updated on 15-Mar-2024

Summary

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Gene symbol
nhej1
Gene description
nonhomologous end-joining factor 1
Locus tag
PHYPO_G00101030
See related
EnsemblRapid:ENSPHYG00025028596
Gene type
protein coding
RefSeq status
MODEL
Organism
Pangasianodon hypophthalmus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Pangasiidae; Pangasianodon
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 2
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_02 current fPanHyp1.pri (GCF_027358585.1) 2 NC_069711.1 (5191823..5208028)

Chromosome 2 - NC_069711.1Genomic Context describing neighboring genes Neighboring gene TSC22 domain family protein 1-like Neighboring gene coiled-coil domain-containing protein 122 Neighboring gene nuclear FMR1 interacting protein 1 Neighboring gene bridging integrator 1b Neighboring gene uncharacterized LOC128317211

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_069711.1 Chromosome 2 Reference fPanHyp1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA end binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in double-strand break repair via nonhomologous end joining IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of DNA ligase IV complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
non-homologous end-joining factor 1
Names
non-homologous end joining factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027358585.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPanHyp1.pri

Genomic

  1. NC_069711.1 Reference fPanHyp1.pri

    Range
    5191823..5208028
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026918678.3 → XP_026774479.1  non-homologous end-joining factor 1

    UniProtKB/TrEMBL
    A0A5N5PWD1
    Related
    ENSPHYP00025060363.1, ENSPHYT00025069393.1
    Conserved Domains (1) summary
    pfam09302
    Location:15 → 180
    XLF; XLF-Cernunnos, XRcc4-like factor, NHEJ component

  2. XM_053230868.1 → XP_053086843.1  non-homologous end-joining factor 1

    UniProtKB/TrEMBL
    A0A5N5PWD1

  3. XM_034313875.1 → XP_034169766.1  non-homologous end-joining factor 1

    UniProtKB/TrEMBL
    A0A5N5PWD1
    Conserved Domains (1) summary
    pfam09302
    Location:15 → 180
    XLF; XLF-Cernunnos, XRcc4-like factor, NHEJ component
Nucleotide Protein
Heading Accession and Version

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