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usp42 ubiquitin specific peptidase 42 [ Pangasianodon hypophthalmus (striped catfish) ]

Gene ID: 113527288, updated on 15-Mar-2024

Summary

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Gene symbol
usp42
Gene description
ubiquitin specific peptidase 42
Locus tag
PHYPO_G00034400
Gene type
protein coding
RefSeq status
MODEL
Organism
Pangasianodon hypophthalmus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Pangasiidae; Pangasianodon
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: 12
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2023_02 current fPanHyp1.pri (GCF_027358585.1) 12 NC_069721.1 (10184657..10195245, complement)

Chromosome 12 - NC_069721.1Genomic Context describing neighboring genes Neighboring gene multiple inositol-polyphosphate phosphatase 1b Neighboring gene cytohesin 3a Neighboring gene eukaryotic translation initiation factor 2-alpha kinase 1 Neighboring gene PMS1 homolog 2, mismatch repair system component

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_069721.1 Chromosome 12 Reference fPanHyp1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin carboxyl-terminal hydrolase 42

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027358585.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPanHyp1.pri

Genomic

  1. NC_069721.1 Reference fPanHyp1.pri

    Range
    10184657..10195245 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026914920.3 → XP_026770721.3  ubiquitin carboxyl-terminal hydrolase 42

  2. XM_026914921.3 → XP_026770722.3  ubiquitin carboxyl-terminal hydrolase 42

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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