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batf basic leucine zipper transcription factor, ATF-like [ Pangasianodon hypophthalmus (striped catfish) ]

Gene ID: 113525197, updated on 15-Mar-2024

Summary

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Gene symbol
batf
Gene description
basic leucine zipper transcription factor, ATF-like
Locus tag
PHYPO_G00184960
See related
EnsemblRapid:ENSPHYG00025005271
Gene type
protein coding
RefSeq status
MODEL
Organism
Pangasianodon hypophthalmus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Pangasiidae; Pangasianodon
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 30
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_02 current fPanHyp1.pri (GCF_027358585.1) 30 NC_069739.1 (601849..609353, complement)

Chromosome 30 - NC_069739.1Genomic Context describing neighboring genes Neighboring gene mucin-2-like Neighboring gene adenylate cyclase type 3-like Neighboring gene transfer RNA leucine (anticodon CAA) Neighboring gene protein c-Fos Neighboring gene Jun dimerization protein 2b

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_069739.1 Chromosome 30 Reference fPanHyp1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
basic leucine zipper transcriptional factor ATF-like
Names
basic leucine zipper ATF-like transcription factor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027358585.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPanHyp1.pri

Genomic

  1. NC_069739.1 Reference fPanHyp1.pri

    Range
    601849..609353 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026911666.3 → XP_026767467.1  basic leucine zipper transcriptional factor ATF-like

    UniProtKB/TrEMBL
    A0A5N5JEG3
    Related
    ENSPHYP00025010891.1, ENSPHYT00025012190.1
    Conserved Domains (1) summary
    cd14701
    Location:27 → 84
    bZIP_BATF; Basic leucine zipper (bZIP) domain of BATF proteins: a DNA-binding and dimerization domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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