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rae1 ribonucleic acid export 1 [ Pangasianodon hypophthalmus (striped catfish) ]

Gene ID: 113525045, updated on 15-Mar-2024

Summary

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Gene symbol
rae1
Gene description
ribonucleic acid export 1
Locus tag
PHYPO_G00104040
See related
EnsemblRapid:ENSPHYG00025010306
Gene type
protein coding
RefSeq status
MODEL
Organism
Pangasianodon hypophthalmus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Pangasiidae; Pangasianodon
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 2
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2023_02 current fPanHyp1.pri (GCF_027358585.1) 2 NC_069711.1 (15033856..15042108)

Chromosome 2 - NC_069711.1Genomic Context describing neighboring genes Neighboring gene prostacyclin synthase Neighboring gene potassium voltage-gated channel subfamily B member 1 Neighboring gene RNA binding motif protein 38 Neighboring gene cytochrome b-c1 complex subunit 1, mitochondrial

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_069711.1 Chromosome 2 Reference fPanHyp1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA export from nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of nuclear pore IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mRNA export factor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027358585.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPanHyp1.pri

Genomic

  1. NC_069711.1 Reference fPanHyp1.pri

    Range
    15033856..15042108
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026911575.3 → XP_026767376.1  mRNA export factor

    UniProtKB/TrEMBL
    A0A5N5PWZ2
    Related
    ENSPHYP00025022861.1, ENSPHYT00025024927.1
    Conserved Domains (2) summary
    sd00039
    Location:42 → 84
    7WD40; WD40 repeat [structural motif]
    cl25539
    Location:40 → 337
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

RNA

  1. XR_008301179.1 RNA Sequence

  2. XR_008301180.1 RNA Sequence

    Related
    ENSPHYT00025024931.1
Nucleotide Protein
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