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PAMR1 peptidase domain containing associated with muscle regeneration 1 [ Athene cunicularia (burrowing owl) ]

Gene ID: 113481204, updated on 15-Mar-2024

Summary

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Gene symbol
PAMR1
Gene description
peptidase domain containing associated with muscle regeneration 1
See related
Ensembl:ENSACUG00000006006
Gene type
protein coding
RefSeq status
MODEL
Organism
Athene cunicularia
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Strigiformes; Strigidae; Athene
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 5
Exon count:
12
Annotation release Status Assembly Chr Location
100 current athCun1 (GCF_003259725.1) 5 Unlocalized Scaffold NW_020799102.1 (10817512..10875627, complement)

NW_020799102.1Genomic Context describing neighboring genes Neighboring gene CD44 molecule (IN blood group) Neighboring gene uncharacterized LOC113481178 Neighboring gene solute carrier family 1 member 2 Neighboring gene uncharacterized LOC113481089 Neighboring gene uncharacterized LOC113481087

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020799102 Chromosome 5 Unlocalized Scaffold Reference athCun1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in complement activation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
inactive serine protease PAMR1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Athene cunicularia Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference athCun1

Genomic

  1. NW_020799102.1 Reference athCun1

    Range
    10817512..10875627 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026850649.1 → XP_026706450.1  inactive serine protease PAMR1 isoform X2

    UniProtKB/TrEMBL
    A0A663MBK1
    Related
    ENSACUP00000008853.1, ENSACUT00000009441.1
    Conserved Domains (5) summary
    cd00033
    Location:280 → 343
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    cd00041
    Location:128 → 234
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    cd00190
    Location:462 → 719
    Tryp_SPc; Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad ...
    pfam00008
    Location:239 → 270
    EGF; EGF-like domain
    pfam00084
    Location:392 → 442
    Sushi; Sushi repeat (SCR repeat)

  2. XM_026850648.1 → XP_026706449.1  inactive serine protease PAMR1 isoform X1

    UniProtKB/TrEMBL
    A0A663MBK1
Nucleotide Protein
Heading Accession and Version

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