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CAPN5 calpain 5 [ Pseudonaja textilis ]

Gene ID: 113450175, updated on 15-Mar-2024

Summary

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Gene symbol
CAPN5
Gene description
calpain 5
Gene type
protein coding
RefSeq status
MODEL
Organism
Pseudonaja textilis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Elapidae; Acanthophiinae; Pseudonaja
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
100 current EBS10Xv2-PRI (GCF_900518735.1) Unplaced Scaffold NW_020769472.1 (509113..580031, complement)

NW_020769472.1Genomic Context describing neighboring genes Neighboring gene glycerophosphodiester phosphodiesterase domain containing 4 Neighboring gene myosin VIIA Neighboring gene olfactory marker protein Neighboring gene alkaline ceramidase 3 Neighboring gene tsukushi, small leucine rich proteoglycan

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020769472 Unplaced Scaffold Reference EBS10Xv2-PRI

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sensory perception of smell IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calpain-5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pseudonaja textilis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EBS10Xv2-PRI

Genomic

  1. NW_020769472.1 Reference EBS10Xv2-PRI

    Range
    509113..580031 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026721330.1 → XP_026577115.1  calpain-5

    Conserved Domains (4) summary
    cd04046
    Location:656 → 781
    C2_Calpain; C2 domain present in Calpain proteins
    pfam00648
    Location:27 → 482
    Peptidase_C2; Calpain family cysteine protease
    pfam01067
    Location:502 → 634
    Calpain_III; Calpain large subunit, domain III
    pfam06554
    Location:159 → 307
    Olfactory_mark; Olfactory marker protein
Nucleotide Protein
Heading Accession and Version

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