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TIA1 TIA1 cytotoxic granule associated RNA binding protein [ Pseudonaja textilis ]

Gene ID: 113445781, updated on 15-Mar-2024

Summary

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Gene symbol
TIA1
Gene description
TIA1 cytotoxic granule associated RNA binding protein
See related
Ensembl:ENSPTXG00000016609
Gene type
protein coding
RefSeq status
MODEL
Organism
Pseudonaja textilis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Elapidae; Acanthophiinae; Pseudonaja
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
100 current EBS10Xv2-PRI (GCF_900518735.1) Unplaced Scaffold NW_020769384.1 (4394183..4415905)

NW_020769384.1Genomic Context describing neighboring genes Neighboring gene prenylcysteine oxidase 1 Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene chromosome unknown C2orf42 homolog Neighboring gene MAX dimerization protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020769384 Unplaced Scaffold Reference EBS10Xv2-PRI

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nucleolysin TIA-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pseudonaja textilis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EBS10Xv2-PRI

Genomic

  1. NW_020769384.1 Reference EBS10Xv2-PRI

    Range
    4394183..4415905
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026715120.1 → XP_026570905.1  nucleolysin TIA-1 isoform X1

    Conserved Domains (3) summary
    cd12618
    Location:106 → 185
    RRM2_TIA1; RNA recognition motif 2 in nucleolysin TIA-1 isoform p40 (p40-TIA-1) and similar proteins
    cd12621
    Location:215 → 288
    RRM3_TIA1; RNA recognition motif 3 in nucleolysin TIA-1 isoform p40 (p40-TIA-1) and similar proteins
    cl17169
    Location:8 → 82
    RRM_SF; RNA recognition motif (RRM) superfamily

  2. XM_026715122.1 → XP_026570907.1  nucleolysin TIA-1 isoform X3

    Conserved Domains (3) summary
    cd12618
    Location:95 → 174
    RRM2_TIA1; RNA recognition motif 2 in nucleolysin TIA-1 isoform p40 (p40-TIA-1) and similar proteins
    cd12621
    Location:204 → 277
    RRM3_TIA1; RNA recognition motif 3 in nucleolysin TIA-1 isoform p40 (p40-TIA-1) and similar proteins
    cl17169
    Location:8 → 82
    RRM_SF; RNA recognition motif (RRM) superfamily

  3. XM_026715121.1 → XP_026570906.1  nucleolysin TIA-1 isoform X2

    UniProtKB/TrEMBL
    A0A670ZM07
    Related
    ENSPTXP00000023898.1, ENSPTXT00000024639.1
    Conserved Domains (3) summary
    cd12618
    Location:105 → 184
    RRM2_TIA1; RNA recognition motif 2 in nucleolysin TIA-1 isoform p40 (p40-TIA-1) and similar proteins
    cd12621
    Location:214 → 287
    RRM3_TIA1; RNA recognition motif 3 in nucleolysin TIA-1 isoform p40 (p40-TIA-1) and similar proteins
    cl17169
    Location:8 → 81
    RRM_SF; RNA recognition motif (RRM) superfamily

  4. XM_026715123.1 → XP_026570908.1  nucleolysin TIA-1 isoform X4

    UniProtKB/TrEMBL
    A0A670ZMD8
    Related
    ENSPTXP00000023900.1, ENSPTXT00000024641.1
    Conserved Domains (3) summary
    cd12618
    Location:94 → 173
    RRM2_TIA1; RNA recognition motif 2 in nucleolysin TIA-1 isoform p40 (p40-TIA-1) and similar proteins
    cd12621
    Location:203 → 276
    RRM3_TIA1; RNA recognition motif 3 in nucleolysin TIA-1 isoform p40 (p40-TIA-1) and similar proteins
    cl17169
    Location:8 → 81
    RRM_SF; RNA recognition motif (RRM) superfamily

  5. XM_026715125.1 → XP_026570910.1  nucleolysin TIA-1 isoform X5

    Conserved Domains (3) summary
    cd12618
    Location:106 → 185
    RRM2_TIA1; RNA recognition motif 2 in nucleolysin TIA-1 isoform p40 (p40-TIA-1) and similar proteins
    cd12621
    Location:215 → 288
    RRM3_TIA1; RNA recognition motif 3 in nucleolysin TIA-1 isoform p40 (p40-TIA-1) and similar proteins
    cl17169
    Location:8 → 82
    RRM_SF; RNA recognition motif (RRM) superfamily

  6. XM_026715126.1 → XP_026570911.1  nucleolysin TIA-1 isoform X6

    Conserved Domains (2) summary
    cd12621
    Location:74 → 147
    RRM3_TIA1; RNA recognition motif 3 in nucleolysin TIA-1 isoform p40 (p40-TIA-1) and similar proteins
    cl17169
    Location:1 → 44
    RRM_SF; RNA recognition motif (RRM) superfamily
Nucleotide Protein
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