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    CHRNA1 cholinergic receptor, nicotinic, alpha 1 (muscle) [ Homo sapiens (human) ]

    Gene ID: 1134, updated on 14-May-2013
    Official Symbol
    CHRNA1provided by HGNC
    Official Full Name
    cholinergic receptor, nicotinic, alpha 1 (muscle)provided by HGNC
    Primary source
    HGNC:1955
    See related
    Ensembl:ENSG00000138435; HPRD:00007; MIM:100690; Vega:OTTHUMG00000132357
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    ACHRA; ACHRD; CHRNA; CMS2A; FCCMS; SCCMS
    Summary
    The muscle acetylcholine receptor consiststs of 5 subunits of 4 different types: 2 alpha subunits and 1 each of the beta, gamma, and delta subunits. This gene encodes an alpha subunit that plays a role in acetlycholine binding/channel gating. Alternatively spliced transcript variants encoding different isoforms have been identified. [provided by RefSeq, Nov 2012]
    Location :
    2q31.1
    Sequence :
    Chromosome: 2; NC_000002.11 (175612320..175629200, complement)
    See CHRNA1 in Epigenomics, MapViewer

    Chromosome 2 - NC_000002.11Genomic Context describing neighboring genes Neighboring gene RNA, U7 small nuclear 44 pseudogene Neighboring gene WAS/WASL interacting protein family, member 1 Neighboring gene H3 histone, family 3A, pseudogene 4 Neighboring gene chimerin 1 Neighboring gene ribosomal protein L21 pseudogene 31

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    CHRNA1-Related Congenital Myasthenic Syndrome

    Summary from GeneReviews: Congenital Myasthenic Syndromes Go to GeneReviews

    Disease Characteristics
    Congenital myasthenic syndromes (designated as CMS throughout this entry) are characterized by fatigable weakness of skeletal muscle (e.g., ocular, bulbar, limb muscles) with onset at or shortly after birth or in early childhood; rarely, symptoms may not manifest until later in childhood. Cardiac and smooth muscle are not involved. Severity and course of disease are highly variable, ranging from minor symptoms to progressive disabling weakness. In some subtypes of CMS, myasthenic symptoms may be mild, but sudden severe exacerbations of weakness or even sudden episodes of respiratory insufficiency may be precipitated by fever, infections, or excitement. Major findings of the neonatal onset subtype include: feeding difficulties; poor suck and cry; choking spells; eyelid ptosis; facial, bulbar, and generalized weakness. In addition arthrogryposis multiplex congenital may be present; respiratory insufficiency with sudden apnea and cyanosis may occur. Later childhood onset subtypes show abnormal muscle fatigability with difficulty in activities such as running or climbing stairs; motor milestones may be delayed; fluctuating eyelid ptosis and fixed or fluctuating extraocular muscle weakness are common presentations.
    Diagnosis Testing
    The diagnosis of CMS is based on clinical findings, a decremental EMG response of the compound muscle action potential (CMAP) on low-frequency (2-3 Hz) stimulation, absence of anti-acetylcholine receptor (AChR) and anti-MuSK antibodies in the serum, and lack of improvement of clinical symptoms with immunosuppressive therapy. Mutations in one of multiple genes encoding proteins expressed at the neuromuscular junction are currently known to be associated with subtypes of CMS, including the genes encoding different subunits of the acetylcholine receptor: CHRNE (epsilonAChR subunit) . CHRNA1 (alphaAChR subunit). CHRNB1 (betaAChR subunit). CHRND (deltaAChR-subunit). AGRN encoding agrin. CHAT encoding choline O-acetyltransferase. COLQ encoding acetylcholinesterase collagenic tail peptide. DOK7 encoding protein Dok-7 . GFPT1 encoding glucosamine--fructose-6-phosphate aminotransferase 1 . MUSK encoding muscle, skeletal receptor tyrosine protein kinase . RAPSN encoding rapsyn (43-kd receptor-associated protein of the synapse). SCN4A encoding the sodium channel protein type 4 subunit alpha. Clinical molecular genetic testing is available for all of these genes.
    Genetic Counseling
    Congenital myasthenic syndromes are inherited in an autosomal recessive, or, less frequently, autosomal dominant manner. In autosomal recessive CMS (AR-CMS), the parents of an affected child are obligate heterozygotes and therefore carry one mutant allele. Heterozygotes (carriers) are asymptomatic. At conception, each sib of an affected individual has a 25% chance of being affected, a 50% chance of being an asymptomatic carrier, and a 25% chance of being unaffected and not a carrier. In autosomal dominant CMS (AD-CMS), some individuals have an affected parent while others have a de novo mutation. The proportion of cases caused by de novo mutations is unknown. Each child of an individual with AD-CMS has a 50% chance of inheriting the mutation. Prenatal testing for pregnancies at increased risk is possible in a clinical laboratory for most subtypes of CMS if the disease-causing mutations in a family are known; prenatal testing for the remaining subtypes may be available through laboratories offering custom prenatal testing.
    References

    Myasthenic syndrome, slow-channel congenital

    Summary from GeneReviews: Congenital Myasthenic Syndromes Go to GeneReviews

    Disease Characteristics
    Congenital myasthenic syndromes (designated as CMS throughout this entry) are characterized by fatigable weakness of skeletal muscle (e.g., ocular, bulbar, limb muscles) with onset at or shortly after birth or in early childhood; rarely, symptoms may not manifest until later in childhood. Cardiac and smooth muscle are not involved. Severity and course of disease are highly variable, ranging from minor symptoms to progressive disabling weakness. In some subtypes of CMS, myasthenic symptoms may be mild, but sudden severe exacerbations of weakness or even sudden episodes of respiratory insufficiency may be precipitated by fever, infections, or excitement. Major findings of the neonatal onset subtype include: feeding difficulties; poor suck and cry; choking spells; eyelid ptosis; facial, bulbar, and generalized weakness. In addition arthrogryposis multiplex congenital may be present; respiratory insufficiency with sudden apnea and cyanosis may occur. Later childhood onset subtypes show abnormal muscle fatigability with difficulty in activities such as running or climbing stairs; motor milestones may be delayed; fluctuating eyelid ptosis and fixed or fluctuating extraocular muscle weakness are common presentations.
    Diagnosis Testing
    The diagnosis of CMS is based on clinical findings, a decremental EMG response of the compound muscle action potential (CMAP) on low-frequency (2-3 Hz) stimulation, absence of anti-acetylcholine receptor (AChR) and anti-MuSK antibodies in the serum, and lack of improvement of clinical symptoms with immunosuppressive therapy. Mutations in one of multiple genes encoding proteins expressed at the neuromuscular junction are currently known to be associated with subtypes of CMS, including the genes encoding different subunits of the acetylcholine receptor: CHRNE (epsilonAChR subunit) . CHRNA1 (alphaAChR subunit). CHRNB1 (betaAChR subunit). CHRND (deltaAChR-subunit). AGRN encoding agrin. CHAT encoding choline O-acetyltransferase. COLQ encoding acetylcholinesterase collagenic tail peptide. DOK7 encoding protein Dok-7 . GFPT1 encoding glucosamine--fructose-6-phosphate aminotransferase 1 . MUSK encoding muscle, skeletal receptor tyrosine protein kinase . RAPSN encoding rapsyn (43-kd receptor-associated protein of the synapse). SCN4A encoding the sodium channel protein type 4 subunit alpha. Clinical molecular genetic testing is available for all of these genes.
    Genetic Counseling
    Congenital myasthenic syndromes are inherited in an autosomal recessive, or, less frequently, autosomal dominant manner. In autosomal recessive CMS (AR-CMS), the parents of an affected child are obligate heterozygotes and therefore carry one mutant allele. Heterozygotes (carriers) are asymptomatic. At conception, each sib of an affected individual has a 25% chance of being affected, a 50% chance of being an asymptomatic carrier, and a 25% chance of being unaffected and not a carrier. In autosomal dominant CMS (AD-CMS), some individuals have an affected parent while others have a de novo mutation. The proportion of cases caused by de novo mutations is unknown. Each child of an individual with AD-CMS has a 50% chance of inheriting the mutation. Prenatal testing for pregnancies at increased risk is possible in a clinical laboratory for most subtypes of CMS if the disease-causing mutations in a family are known; prenatal testing for the remaining subtypes may be available through laboratories offering custom prenatal testing.
    References
    Protein Gene Interaction Pubs
    Envelope surface glycoprotein gp120 env HIV-1 gp120 binds to nicotinic acetylcholine receptors in muscle cells and neurons PubMed

    Go to the HIV-1, Human Protein Interaction Database

    Products Interactant Other Gene Complex Source Pubs Description
    P02708 Q07001 CHRND    HPRD  PubMed  
    P02708 Q04844 CHRNE    HPRD  PubMed  
    P02708 P07510 CHRNG    HPRD  PubMed  
    P02708 Q13683 ITGA7    HPRD  PubMed  
    BioGRID:107556 BioGRID:107566 CHRND    BioGRID  PubMed Co-fractionation; Reconstituted Complex 
    BioGRID:107556 BioGRID:107567 CHRNE    BioGRID  PubMed Reconstituted Complex 
    BioGRID:107556 BioGRID:107568 CHRNG    BioGRID  PubMed Co-fractionation 
    BioGRID:107556 BioGRID:109885 ITGA7    BioGRID  PubMed Affinity Capture-Western 

    Markers

    Homology

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    contributes_to acetylcholine binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    contributes_to acetylcholine receptor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    acetylcholine-activated cation-selective channel activity IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    contributes_to acetylcholine-activated cation-selective channel activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    ion channel activity TAS
    Traceable Author Statement
    more info
    PubMed 
    Process Evidence Code Pubs
    muscle cell homeostasis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    musculoskeletal movement IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    neuromuscular junction development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    neuromuscular process IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    neuromuscular synaptic transmission IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    neuron homeostasis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    regulation of action potential in neuron IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    regulation of membrane potential IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    signal transduction TAS
    Traceable Author Statement
    more info
    PubMed 
    skeletal muscle contraction IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    skeletal muscle tissue growth IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    synaptic transmission TAS
    Traceable Author Statement
    more info
     
    transport TAS
    Traceable Author Statement
    more info
    PubMed 
    Component Evidence Code Pubs
    acetylcholine-gated channel complex ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    cell junction IEA
    Inferred from Electronic Annotation
    more info
     
    cell surface IDA
    Inferred from Direct Assay
    more info
    PubMed 
    neuromuscular junction IDA
    Inferred from Direct Assay
    more info
    PubMed 
    neuromuscular junction ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    plasma membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    plasma membrane TAS
    Traceable Author Statement
    more info
     
    postsynaptic membrane NAS
    Non-traceable Author Statement
    more info
    PubMed 
    Preferred Names
    acetylcholine receptor subunit alpha
    Names
    acetylcholine receptor subunit alpha
    nicotinic cholinergic receptor alpha 1
    muscle nicotinic acetylcholine receptor
    nicotinic acetylcholine receptor alpha subunit
    acetylcholine receptor, nicotinic, alpha 1 (muscle)
    cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_008172.1 RefSeqGene

      Range
      5001..21881
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_000079.3NP_000070.1  acetylcholine receptor subunit alpha isoform b precursor

      Status: REVIEWED

      Description
      Transcript Variant: This variant (2) lacks an in-frame segment of the coding region, compared to variant 1. It encodes a shorter isoform (b), that is missing an internal segment compared to isoform a.
      Source sequence(s)
      AK315312, BC043196, Y00762
      Consensus CDS
      CCDS2261.1
      UniProtKB/Swiss-Prot
      P02708
      UniProtKB/TrEMBL
      Q53SH4
      Related
      ENSP00000261008, OTTHUMP00000163187, ENST00000348749, OTTHUMT00000255479
      Conserved Domains (3) summary
      TIGR00860
      Location:21447
      Blast Score: 627
      LIC; Cation transporter family protein
      pfam02931
      Location:24231
      Blast Score: 718
      Neur_chan_LBD; Neurotransmitter-gated ion-channel ligand binding domain
      pfam02932
      Location:238446
      Blast Score: 450
      Neur_chan_memb; Neurotransmitter-gated ion-channel transmembrane region
    2. NM_001039523.2NP_001034612.1  acetylcholine receptor subunit alpha isoform a precursor

      Status: REVIEWED

      Description
      Transcript Variant: This variant (1) represents the longer transcript, and encodes the longer isoform (a).
      Source sequence(s)
      AK315312, BC043196, CD013889
      Consensus CDS
      CCDS33331.1
      UniProtKB/Swiss-Prot
      P02708
      UniProtKB/TrEMBL
      Q53SH4
      Related
      ENSP00000261007, OTTHUMP00000205172, ENST00000261007, OTTHUMT00000334116
      Conserved Domains (3) summary
      TIGR00860
      Location:21472
      Blast Score: 592
      LIC; Cation transporter family protein
      pfam02931
      Location:24256
      Blast Score: 685
      Neur_chan_LBD; Neurotransmitter-gated ion-channel ligand binding domain
      pfam02932
      Location:263471
      Blast Score: 449
      Neur_chan_memb; Neurotransmitter-gated ion-channel transmembrane region

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 104

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p10 Primary Assembly

    Genomic

    1. NC_000002.11 Reference GRCh37.p10 Primary Assembly

      Range
      175612320..175629200, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000134.1 Alternate HuRef

      Range
      167492831..167509717, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate CHM1_1.0

    Genomic

    1. NC_018913.1 Alternate CHM1_1.0

      Range
      175007051..175023918, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

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