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RNF144B ring finger protein 144B [ Ursus arctos (brown bear) ]

Gene ID: 113264509, updated on 15-Mar-2024

Summary

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Gene symbol
RNF144B
Gene description
ring finger protein 144B
See related
EnsemblRapid:ENSUARG00005005858
Gene type
protein coding
RefSeq status
MODEL
Organism
Ursus arctos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ursus
Orthologs
human mouse all
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Genomic context

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See RNF144B in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_06 current UrsArc2.0 (GCF_023065955.2) Unplaced Scaffold NW_026622997.1 (21380710..21552974)
102 previous assembly UrsArc1.0 (GCF_023065955.1) Unplaced Scaffold NW_025929728.1 (13741405..13916318, complement)

NW_026622997.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC130542240 Neighboring gene lysine demethylase 1B Neighboring gene DEK proto-oncogene Neighboring gene 60S ribosomal protein L39-like Neighboring gene uncharacterized LOC123001713 Neighboring gene transfer RNA glycine (anticodon GCC)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin conjugating enzyme binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of proteasomal ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein polyubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrial membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase RNF144B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_023065955.2-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UrsArc2.0 Primary Assembly

Genomic

  1. NW_026622997.1 Reference UrsArc2.0 Primary Assembly

    Range
    21380710..21552974
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048225688.2 → XP_048081645.1  E3 ubiquitin-protein ligase RNF144B isoform X3

  2. XM_048225687.2 → XP_048081644.1  E3 ubiquitin-protein ligase RNF144B isoform X2

  3. XM_044388779.3 → XP_044244714.1  E3 ubiquitin-protein ligase RNF144B isoform X3

    Conserved Domains (3) summary
    smart00647
    Location:101 → 166
    IBR; In Between Ring fingers
    cd16778
    Location:28 → 84
    mRING-HC-C4C4_RBR_RNF144B; Modified RING finger, HC subclass (C4C4-type), found in RING finger protein 144B (RNF144B)
    pfam01485
    Location:190 → 225
    IBR; IBR domain, a half RING-finger domain

  4. XM_057304961.1 → XP_057160944.1  E3 ubiquitin-protein ligase RNF144B isoform X3

  5. XM_026511567.4 → XP_026367352.1  E3 ubiquitin-protein ligase RNF144B isoform X3

    Conserved Domains (3) summary
    smart00647
    Location:101 → 166
    IBR; In Between Ring fingers
    cd16778
    Location:28 → 84
    mRING-HC-C4C4_RBR_RNF144B; Modified RING finger, HC subclass (C4C4-type), found in RING finger protein 144B (RNF144B)
    pfam01485
    Location:190 → 225
    IBR; IBR domain, a half RING-finger domain

  6. XM_026511563.4 → XP_026367348.2  E3 ubiquitin-protein ligase RNF144B isoform X1

Nucleotide Protein
Heading Accession and Version

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