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Zc3h4 zinc finger CCCH-type containing 4 [ Urocitellus parryii (Arctic ground squirrel) ]

Gene ID: 113197908, updated on 15-Mar-2024

Summary

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Gene symbol
Zc3h4
Gene description
zinc finger CCCH-type containing 4
See related
Ensembl:ENSUPAG00010009793
Gene type
protein coding
RefSeq status
MODEL
Organism
Urocitellus parryii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Urocitellus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
18
Annotation release Status Assembly Chr Location
100 current ASM342692v1 (GCF_003426925.1) Unplaced Scaffold NW_020540344.1 (808743..847731, complement)

NW_020540344.1Genomic Context describing neighboring genes Neighboring gene neuronal PAS domain protein 1 Neighboring gene transmembrane protein 160 Neighboring gene small nucleolar RNA U6-53/MBII-28 Neighboring gene SUMO1 activating enzyme subunit 1 Neighboring gene BCL2 binding component 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020540344 Unplaced Scaffold Reference ASM342692v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger CCCH domain-containing protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Urocitellus parryii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM342692v1

Genomic

  1. NW_020540344.1 Reference ASM342692v1

    Range
    808743..847731 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026410428.1 → XP_026266213.1  zinc finger CCCH domain-containing protein 4 isoform X1

    UniProtKB/TrEMBL
    A0A8D2H6R0
    Conserved Domains (4) summary
    smart00356
    Location:420 → 444
    ZnF_C3H1; zinc finger
    COG5084
    Location:384 → 466
    YTH1; Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
    cl26464
    Location:986 → 1279
    Atrophin-1; Atrophin-1 family
    cl28033
    Location:857 → 1123
    Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region

  2. XM_026410427.1 → XP_026266212.1  zinc finger CCCH domain-containing protein 4 isoform X1

    UniProtKB/TrEMBL
    A0A8D2H6R0
    Conserved Domains (4) summary
    smart00356
    Location:420 → 444
    ZnF_C3H1; zinc finger
    COG5084
    Location:384 → 466
    YTH1; Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
    cl26464
    Location:986 → 1279
    Atrophin-1; Atrophin-1 family
    cl28033
    Location:857 → 1123
    Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region

  3. XM_026410430.1 → XP_026266215.1  zinc finger CCCH domain-containing protein 4 isoform X2

    UniProtKB/TrEMBL
    A0A8D2H6R0
    Related
    ENSUPAP00010012109.1, ENSUPAT00010013888.1
    Conserved Domains (4) summary
    smart00356
    Location:379 → 403
    ZnF_C3H1; zinc finger
    COG5084
    Location:343 → 425
    YTH1; Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
    cl26464
    Location:945 → 1238
    Atrophin-1; Atrophin-1 family
    cl28033
    Location:816 → 1082
    Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region

  4. XM_026410432.1 → XP_026266217.1  zinc finger CCCH domain-containing protein 4 isoform X4

    UniProtKB/TrEMBL
    A0A8D2H6R0, A0A8D2KGW9
    Related
    ENSUPAP00010012102.1, ENSUPAT00010013881.1
    Conserved Domains (4) summary
    smart00356
    Location:371 → 395
    ZnF_C3H1; zinc finger
    COG5084
    Location:335 → 417
    YTH1; Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
    cl26464
    Location:937 → 1230
    Atrophin-1; Atrophin-1 family
    cl28033
    Location:808 → 1074
    Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region

  5. XM_026410431.1 → XP_026266216.1  zinc finger CCCH domain-containing protein 4 isoform X3

    UniProtKB/TrEMBL
    A0A8D2H6R0
    Conserved Domains (4) summary
    smart00356
    Location:374 → 398
    ZnF_C3H1; zinc finger
    COG5084
    Location:338 → 420
    YTH1; Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
    cl26464
    Location:940 → 1233
    Atrophin-1; Atrophin-1 family
    cl28033
    Location:811 → 1077
    Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region
Nucleotide Protein
Heading Accession and Version

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