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Lmo1 LIM domain only 1 [ Urocitellus parryii (Arctic ground squirrel) ]

Gene ID: 113197320, updated on 15-Mar-2024

Summary

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Gene symbol
Lmo1
Gene description
LIM domain only 1
See related
Ensembl:ENSUPAG00010023254
Gene type
protein coding
RefSeq status
MODEL
Organism
Urocitellus parryii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Urocitellus
Orthologs
human mouse all
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Genomic context

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See Lmo1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current ASM342692v1 (GCF_003426925.1) Unplaced Scaffold NW_020540321.1 (226511..266319, complement)

NW_020540321.1Genomic Context describing neighboring genes Neighboring gene TUB bipartite transcription factor Neighboring gene RIC3 acetylcholine receptor chaperone Neighboring gene serine/threonine kinase 33 Neighboring gene tripartite motif containing 66

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020540321 Unplaced Scaffold Reference ASM342692v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
rhombotin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Urocitellus parryii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM342692v1

Genomic

  1. NW_020540321.1 Reference ASM342692v1

    Range
    226511..266319 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026409578.1 → XP_026265363.1  rhombotin-1 isoform X2

    UniProtKB/TrEMBL
    A0A8D2KPR3
    Related
    ENSUPAP00010029556.1, ENSUPAT00010033619.1
    Conserved Domains (2) summary
    cd09388
    Location:23 → 77
    LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
    cd09389
    Location:87 → 141
    LIM2_LMO1_LMO3; The second LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)

  2. XM_026409577.1 → XP_026265362.1  rhombotin-1 isoform X1

    UniProtKB/TrEMBL
    A0A8D2KQ38
    Related
    ENSUPAP00010029557.1, ENSUPAT00010033620.1
    Conserved Domains (2) summary
    cd09388
    Location:24 → 78
    LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
    cd09389
    Location:88 → 142
    LIM2_LMO1_LMO3; The second LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
Nucleotide Protein
Heading Accession and Version

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