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Stx5 syntaxin 5 [ Urocitellus parryii (Arctic ground squirrel) ]

Gene ID: 113195915, updated on 15-Mar-2024

Summary

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Gene symbol
Stx5
Gene description
syntaxin 5
See related
Ensembl:ENSUPAG00010005335
Gene type
protein coding
RefSeq status
MODEL
Organism
Urocitellus parryii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Urocitellus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current ASM342692v1 (GCF_003426925.1) Unplaced Scaffold NW_020540254.1 (1790089..1815315, complement)

NW_020540254.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 179B Neighboring gene transmembrane protein 223 Neighboring gene nuclear RNA export factor 1 Neighboring gene testis-expressed protein 54-like Neighboring gene WD repeat domain 74

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020540254 Unplaced Scaffold Reference ASM342692v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables SNAP receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables SNARE binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle docking IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle fusion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of SNARE complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endomembrane system IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syntaxin-5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Urocitellus parryii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM342692v1

Genomic

  1. NW_020540254.1 Reference ASM342692v1

    Range
    1790089..1815315 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026407643.1 → XP_026263428.1  syntaxin-5

    UniProtKB/TrEMBL
    A0A8D2H4F7
    Conserved Domains (3) summary
    COG5325
    Location:94 → 323
    COG5325; t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
    cd15844
    Location:265 → 337
    SNARE_syntaxin5; SNARE motif of syntaxin 5
    pfam11416
    Location:53 → 73
    Syntaxin-5_N; Syntaxin-5 N-terminal, Sly1p-binding domain

  2. XM_026407644.1 → XP_026263429.1  syntaxin-5

    UniProtKB/TrEMBL
    A0A8D2H4F7
    Related
    ENSUPAP00010006715.1, ENSUPAT00010007673.1
    Conserved Domains (3) summary
    COG5325
    Location:94 → 323
    COG5325; t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
    cd15844
    Location:265 → 337
    SNARE_syntaxin5; SNARE motif of syntaxin 5
    pfam11416
    Location:53 → 73
    Syntaxin-5_N; Syntaxin-5 N-terminal, Sly1p-binding domain
Nucleotide Protein
Heading Accession and Version

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