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Zcchc3 zinc finger CCHC-type containing 3 [ Urocitellus parryii (Arctic ground squirrel) ]

Gene ID: 113192117, updated on 15-Mar-2024

Summary

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Gene symbol
Zcchc3
Gene description
zinc finger CCHC-type containing 3
See related
Ensembl:ENSUPAG00010018775
Gene type
protein coding
RefSeq status
MODEL
Organism
Urocitellus parryii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Urocitellus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
1
Annotation release Status Assembly Chr Location
100 current ASM342692v1 (GCF_003426925.1) Unplaced Scaffold NW_020540148.1 (1085782..1087275, complement)

NW_020540148.1Genomic Context describing neighboring genes Neighboring gene neurensin 2 Neighboring gene SRY-box transcription factor 12 Neighboring gene chromosome unknown C20orf96 homolog Neighboring gene defensin beta 132

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020540148 Unplaced Scaffold Reference ASM342692v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables double-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in activation of innate immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cellular response to exogenous dsRNA IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in defense response to virus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in detection of virus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of RIG-I signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of type I interferon production IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger CCHC domain-containing protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Urocitellus parryii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM342692v1

Genomic

  1. NW_020540148.1 Reference ASM342692v1

    Range
    1085782..1087275 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026402137.1 → XP_026257922.1  zinc finger CCHC domain-containing protein 3

    UniProtKB/TrEMBL
    A0A8D2I0A1
    Related
    ENSUPAP00010023689.1, ENSUPAT00010026944.1
    Conserved Domains (1) summary
    cl26705
    Location:331 → 384
    AIR1; Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Nucleotide Protein
Heading Accession and Version

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